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#!/bin/sh ## Make sure to have installed NEURON compatible with CoreNEURON ## Compile CoreNEURON with GPU support ## Make sure $PATH is correctly set and modules are loaded nrnivmodl mod nrnivmodl-core mod names="deriv gf kin conc watch vecplay" for i in $names ; do x86_64/special -c sim_time=100 test${i}.hoc cat out${i}.dat | sort -k 1n,1n -k 2n,2n > out_nrn_${i}.spk rm out${i}.dat done for i in $names ; do x86_64/special -c sim_time=100 -c coreneuron=1 test${i}.hoc cat out.dat | sort -k 1n,1n -k 2n,2n > out_core_online_${i}.spk rm out.dat done for i in $names ; do x86_64/special-core -d test${i}dat --cell-permute 1 -e 100 cat out.dat | sort -k 1n,1n -k 2n,2n > out_core_file_${i}.spk rm out.dat done for i in $names ; do diff -w -q out_nrn_${i}.spk out_core_online_${i}.spk diff -w -q out_nrn_${i}.spk out_core_file_${i}.spk done
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