The package not run for previous download data, and do not start a new download data #49
Comments
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Hi @karolazvdo, Thank you very much for reaching out! Could you please confirm if you are using the CRAN version or GitHub version of the package? Because CRAN policies forbid frequent updates, the GitHub version of the package might have some updates that fix this issue. So, if you're using the CRAN version, could you please try the GitHub version (see here for instructions)? If that that doesn't work, could you please post your session information (output from running Ah - may I ask how you're importing the Protected Planet data after downloading it? I would suggest using the Does that help? Please let me know if anything I've written isn't clear, or if you have any further questions? |
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Hi Jeff,
Indeed, I have imported the shapefile previously downloaded from the
website, as a SpatialPolygonsDataFrame(). Therefore, I had to map my
results by other means. I have found your package recently, and I really
like it. But the other path to import and work with it, I do not have
succeeded. I'll leave here the output from sessionInfo() as requested. I
had installed the package from the GitHub version as instructed.
*mlt_raw_pa_data <- wdpa_fetch("Malta", wait = TRUE,download_dir =
rappdirs::user_data_dir("wdpar"))*
*Error in checkError(res) : *
* Undefined error in httr call. httr output: Failed to connect to
localhost port 14557: Connection refused*
*sessionInfo()*
*R version 4.1.2 (2021-11-01)*
*Platform: x86_64-w64-mingw32/x64 (64-bit)**Running under: Windows 10 x64
(build 22000)*
*Matrix products: default*
*locale:*
*[1] LC_COLLATE=Portuguese_Brazil.1252 LC_CTYPE=Portuguese_Brazil.1252 *
*[3] LC_MONETARY=Portuguese_Brazil.1252 LC_NUMERIC=C **[5]
LC_TIME=Portuguese_Brazil.1252 *
*attached base packages:**[1] stats graphics grDevices utils
datasets methods base *
*other attached packages:**[1] ggmap_3.0.0 ggplot2_3.3.6 dplyr_1.0.8
wdpar_1.3.2.3 sf_1.0-7 *
*loaded via a namespace (and not attached):*
* [1] tidyselect_1.1.2 terra_1.5-21 purrr_0.3.4
lattice_0.20-45 *
* [5] colorspace_2.0-3 vctrs_0.3.8 generics_0.1.2
yaml_2.3.5 *
* [9] XML_3.99-0.10 utf8_1.2.2 rlang_1.0.1
e1071_1.7-11 *
*[13] pillar_1.7.0 glue_1.6.1 withr_2.5.0
DBI_1.1.2 *
*[17] rappdirs_0.3.3 sp_1.5-0 semver_0.2.0
jpeg_0.1-9 *
*[21] lifecycle_1.0.1 plyr_1.8.6 stringr_1.4.0
munsell_0.5.0 *
*[25] binman_0.1.2 gtable_0.3.0 raster_3.5-15
caTools_1.18.2 *
*[29] RgoogleMaps_1.4.5.3 codetools_0.2-18 wdman_0.2.5
ps_1.7.0 *
*[33] curl_4.3.2 class_7.3-19 fansi_1.0.2
Rcpp_1.0.8.3 *
*[37] KernSmooth_2.23-20 openssl_2.0.2 scales_1.2.0
classInt_0.4-7 *
*[41] RSelenium_1.7.7 jsonlite_1.8.0 countrycode_1.4.0
askpass_1.1 *
*[45] rjson_0.2.21 png_0.1-7 stringi_1.7.6
processx_3.6.0 *
*[49] grid_4.1.2 cli_3.1.1 tools_4.1.2
bitops_1.0-7 *
*[53] magrittr_2.0.2 proxy_0.4-27 tibble_3.1.6
crayon_1.5.1 *
*[57] tidyr_1.2.0 pkgconfig_2.0.3 ellipsis_0.3.2
assertthat_0.2.1 **[61] httr_1.4.3 R6_2.5.1
units_0.8-0 compiler_4.1.2 *
Em ter., 14 de jun. de 2022 às 00:02, Jeff Hanson ***@***.***>
escreveu:
… Hi @karolazvdo <https://github.com/karolazvdo>,
Thank you very much for reaching out!
Could you please confirm if you are using the CRAN version or GitHub
version of the package? Because CRAN policies forbid frequent updates, the
GitHub version of the package might have some updates that fix this issue.
So, if you're using the CRAN version, could you please try the GitHub
version (see here for instructions <https://prioritizr.github.io/wdpar>)?
If that that doesn't work, could you please post your session information
(output from running sessionInfo()) so I can get more information on your
R setup?
Ah - may I ask how you're importing the Protected Planet data after
downloading it? I would suggest using the wdpar::wdpa_read() function (see
here for documentation
<https://prioritizr.github.io/wdpar/reference/wdpa_read.html>). This
function will read in the .zip file downloaded from Protected Planet (as
an sf object). I might have this wrong, but based on the error message
shown it seems like you might have imported the shapefile data as a
SpatialPolygonsDataFrame object (e.g., using the rgdal::readOGR function
or raster::shapefile() function) - is that right? If so, the reason for
this error is that the st_transform() function is designed to work with sf
objects (which are a different way R can store shapefiles, or spatial data
in general). So, if you read in the data using wdpar::wdpa_read() then
st_transform should work (alternatively, you could use sf::read_sf() to
read shapefile/spatial data in as an sf object).
Does that help? Please let me know if anything I've written isn't clear,
or if you have any further questions?
—
Reply to this email directly, view it on GitHub
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You are receiving this because you were mentioned.Message ID:
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--
Karoline Azevedo, M.Sc.
Biologist
Phone: +55 (82) 99905-1210
Lattes/C.V. (Pt): http://lattes.cnpq.br/5407395559226556
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Ah ok - yeah, thanks for trying the GitHub version. I sometimes encountered this error in earlier versions of the package if I accidently closed R while it was downloading the data - and the only way to fix that was restarting the computer, so maybe you could try that? Also, did the |
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@karolazvdo, I just wanted to follow up and ask if that solved the issue? |
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Hi,
actually, once I already had the shapefiles downloaded from the website, I
used the sf package to work with them. Even trying the github version or
restarting the session, the functions from the wdpar package, like
wdpa_read() or wdpa_fetch() unfortunately did not work.
Thanks for the concern.
Em seg., 4 de jul. de 2022 às 17:21, Jeff Hanson ***@***.***>
escreveu:
… @karolazvdo <https://github.com/karolazvdo>, I just wanted to follow up
and ask if that solved the issue?
—
Reply to this email directly, view it on GitHub
<#49 (comment)>,
or unsubscribe
<https://github.com/notifications/unsubscribe-auth/AYFXEPVMRVTZ3Z7UIB2MKG3VSNBVZANCNFSM5YUNKQ4A>
.
You are receiving this because you were mentioned.Message ID:
***@***.***>
--
Karoline Azevedo, M.Sc.
Biologist
Phone: +55 (82) 99905-1210
Lattes/C.V. (Pt): http://lattes.cnpq.br/5407395559226556
ORCID ID (En): https://orcid.org/0000-0002-6302-4187
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Ah ok - sorry I'm sorry we couldn't get it working on your computer. Is there anything else I can help with? If not, I'll close this issue. |
I've been trying to run the tutorial example, but the error happens since the first step to download data for mapping the protected areas.
mlt_raw_pa_data <- wdpa_fetch("Malta", wait = TRUE, download_dir = rappdirs::user_data_dir("wdpar")) Error in checkError(res) : Undefined error in httr call. httr output: Failed to connect to localhost port 4567: Connection refused lie_raw_data <- wdpa_fetch("Liechtenstein", wait = TRUE) Error in checkError(res) : Undefined error in httr call. httr output: Failed to connect to localhost port 4567: Connection refusedAnd even if I try to run the next steps with a data downloaded diretcly from the website of Protected Planet, it is not works.
shp_data <- st_transform(shp, 4326) Error in UseMethod("st_transform") : no applicable method for 'st_transform' applied to an object of class "c('SpatialPolygonsDataFrame', 'SpatialPolygons', 'Spatial', 'SpatialVector')"The text was updated successfully, but these errors were encountered: