ptdev: refine the functions name & code position

refine some functions name and put functions under proper sequence
- get_remapping_entry -> get_entry
- ptdev_native_owned_intx -> ptdev_hv_owned_intx
- ptdev_build_native_msi -> ptdev_build_physical_msi
- ptdev_build_native_rte -> ptdev_build_physical_rte
- update_active_native_ioapic -> activate_physical_ioapic
- ptdev_vm_deinit -> ptdev_release_all_entries

Signed-off-by: Jason Chen CJ <jason.cj.chen@intel.com>

Author: JasonChenCJ