MetaWise

Deep Learning model of metastatic tumors classifier

https://www.biorxiv.org/content/10.1101/2022.09.29.510207v1

Deep learning model accurately classifies metastatic tumors from primary tumors based on mutational signatures

https://www.nature.com/articles/s41598-023-35842-w

Code

├── category_dataloader.py load category type data

├── category_settings.yml load category type data

├── train_models.py model training code

├── Mutational_Signatures_Analysis_for_WES_data.R data pre-processing code

├── value_label_dataloader.py load value/label data

└── value_label_settings.yml load value/label data

Getting Started

1. pre-requirements:

   tensorflow-gpu 2.4.0

   python 3.7.13

   pandas 1.3.5

   numpy 1.19.5

   keras 2.9.0

   cudnn 8.0.5.39

   cuda 11.0.3

2. model training:

python3 train_models.py