LatPack is software originally written at the University of Freiburg (http://www.bioinf.uni-freiburg.de/Software/LatPack/). This version has received a few modifications for my research purposes:
- Random number generator uses Random123 library (https://www.deshawresearch.com/resources_random123.html)
- Simulation data (
latFold,latFoldVec) can be output to HDF5 file format - New program
latMapTrajbased onlatMapto analyze simulation trajectories - Ribosome feature in
latFoldVecto imitate tethered C-terminus - Conformation counting for more precise native conformation occupancy measurement
One needs to install and compile BIU (included here) and ELL (Energy Landscape Library) first. HDF5 also needs to be installed.
./configure --with-BIU=${PATHTOBIU} \
--with-ELL=${PATHTOELL} \
--with-HDF5=${HDF5PATH} \
--enable-latFold CXXFLAGS="-std=c++0x"
make
make install
copyright 2020 by Victor Zhao copyright 2008 by Martin Mann (http://www.bioinf.uni-freiburg.de/~mmann/)
This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 2 of the License, or (at your option) any later version.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
You should have received a copy of the GNU General Public License along with this program. If not, see http://www.gnu.org/licenses/.