Source code included in immds repository

1. scripts for loading immune dataset into mongo db database
2. scripts to calculate the frequency of vgenes over a given population

Note for running scripts

1. make sure python3 and pymongo are installed
2. make sure you have a valid mongodb account
3. checkout source code from github

git clone https://github.com/pughlab/immds.git

Running vgene frequency calculation

python src/calculate_vgene_frequency.py
    -n samwise
    -u imm_user
    -p somepassword
    -s TLML
    -o ~/Projects/tcell_clonality_blast
    -f TLML_frequency_data