This is a Dockerized test of the bug reported here
To reproduce:
docker build -t testconda . && docker run --rm testconda(This creates a testconda Docker image that you will want to delete (docker rmi testconda) after confirming the issue)
$ docker build -t testconda . && docker run --rm testcondada
[+] Building 0.1s (11/11) FINISHED docker:default
=> [internal] load build definition from Dockerfile 0.0s
=> => transferring dockerfile: 525B 0.0s
=> [internal] load metadata for docker.io/library/ubuntu:22.04 0.0s
=> [internal] load .dockerignore 0.0s
=> => transferring context: 2B 0.0s
=> [1/6] FROM docker.io/library/ubuntu:22.04 0.0s
=> [internal] load build context 0.0s
=> => transferring context: 34B 0.0s
=> CACHED [2/6] RUN apt update && apt install -y wget 0.0s
=> CACHED [3/6] RUN wget https://github.com/conda-forge/miniforge/releases/latest/download/Miniforge3-Linux-x86_ 0.0s
=> CACHED [4/6] RUN adduser --home /home/conda --shell /bin/bash --uid 1000 --disabled-password --gecos "" conda 0.0s
=> CACHED [5/6] COPY --chown=conda:conda testconda.sh /home/conda/testconda.sh 0.0s
=> CACHED [6/6] WORKDIR /home/conda 0.0s
=> exporting to image 0.0s
=> => exporting layers 0.0s
=> => writing image sha256:e1990c56c9e0ae85d67e0cd4d5acdc8714676a2b5dda9c5491665c537ea2968a 0.0s
=> => naming to docker.io/library/testconda 0.0s
What's Next?
View a summary of image vulnerabilities and recommendations → docker scout quickview
Warning: 'conda-forge' already in 'channels' list, moving to the top
Loading channels: ...working... done
# Name Version Build Channel
perl-bioperl 1.7.2 pl526_11 bioconda
Loading channels: ...working... done
# Name Version Build Channel
prokka 1.14.6 pl5262hdfd78af_3 bioconda
Channels:
- conda-forge
- bioconda
- defaults
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... warning libmamba Problem type not implemented SOLVER_RULE_STRICT_REPO_PRIORITY
warning libmamba Problem type not implemented SOLVER_RULE_STRICT_REPO_PRIORITY
warning libmamba Problem type not implemented SOLVER_RULE_STRICT_REPO_PRIORITY
warning libmamba Problem type not implemented SOLVER_RULE_STRICT_REPO_PRIORITY
warning libmamba Problem type not implemented SOLVER_RULE_STRICT_REPO_PRIORITY
warning libmamba Problem type not implemented SOLVER_RULE_STRICT_REPO_PRIORITY
warning libmamba Problem type not implemented SOLVER_RULE_STRICT_REPO_PRIORITY
warning libmamba Problem type not implemented SOLVER_RULE_STRICT_REPO_PRIORITY
warning libmamba Problem type not implemented SOLVER_RULE_STRICT_REPO_PRIORITY
warning libmamba Problem type not implemented SOLVER_RULE_STRICT_REPO_PRIORITY
warning libmamba Problem type not implemented SOLVER_RULE_STRICT_REPO_PRIORITY
warning libmamba Problem type not implemented SOLVER_RULE_STRICT_REPO_PRIORITY
warning libmamba Problem type not implemented SOLVER_RULE_STRICT_REPO_PRIORITY
warning libmamba Problem type not implemented SOLVER_RULE_STRICT_REPO_PRIORITY
warning libmamba Problem type not implemented SOLVER_RULE_STRICT_REPO_PRIORITY
warning libmamba Problem type not implemented SOLVER_RULE_STRICT_REPO_PRIORITY
warning libmamba Problem type not implemented SOLVER_RULE_STRICT_REPO_PRIORITY
warning libmamba Problem type not implemented SOLVER_RULE_STRICT_REPO_PRIORITY
warning libmamba Problem type not implemented SOLVER_RULE_STRICT_REPO_PRIORITY
warning libmamba Problem type not implemented SOLVER_RULE_STRICT_REPO_PRIORITY
warning libmamba Problem type not implemented SOLVER_RULE_STRICT_REPO_PRIORITY
warning libmamba Problem type not implemented SOLVER_RULE_STRICT_REPO_PRIORITY
warning libmamba Problem type not implemented SOLVER_RULE_STRICT_REPO_PRIORITY
warning libmamba Problem type not implemented SOLVER_RULE_STRICT_REPO_PRIORITY
warning libmamba Problem type not implemented SOLVER_RULE_STRICT_REPO_PRIORITY
warning libmamba Problem type not implemented SOLVER_RULE_STRICT_REPO_PRIORITY
warning libmamba Problem type not implemented SOLVER_RULE_STRICT_REPO_PRIORITY
failed
LibMambaUnsatisfiableError: Encountered problems while solving:
- package perl-bioperl-1.7.2-pl526_11 requires perl-bio-coordinate, but none of the providers can be installed
Could not solve for environment specs
The following packages are incompatible
├─ perl-bioperl ==1.7.2 pl526_11 is not installable because it requires
│ ├─ perl >=5.26.2,<5.26.3.0a0 , which can be installed;
│ └─ perl-bio-coordinate but there are no viable options
│ ├─ perl-bio-coordinate 1.007001 would require
│ │ └─ perl-parent but there are no viable options
│ │ ├─ perl-parent [0.236|0.238|0.239|0.240|0.241] would require
│ │ │ └─ perl >=5.32.1,<6.0a0 *_perl5, which conflicts with any installable versions previously reported;
│ │ └─ perl-parent 0.236 conflicts with any installable versions previously reported;
│ └─ perl-bio-coordinate 1.007001 would require
│ └─ perl >=5.32.1,<6.0a0 *_perl5, which conflicts with any installable versions previously reported;
└─ prokka ==1.14.6 pl5262hdfd78af_3 is not installable because it requires
└─ perl-xml-simple but there are no viable options
├─ perl-xml-simple 2.22 would require
│ └─ perl >=5.22.0,<5.23.0 , which conflicts with any installable versions previously reported;
├─ perl-xml-simple [2.22|2.25] would require
│ └─ perl-xml-sax-expat but there are no viable options
│ ├─ perl-xml-sax-expat 0.51 would require
│ │ └─ perl >=5.32.1,<6.0a0 *_perl5, which conflicts with any installable versions previously reported;
│ └─ perl-xml-sax-expat 0.51 conflicts with any installable versions previously reported;
└─ perl-xml-simple 2.25 would require
└─ perl >=5.32.1,<6.0a0 *_perl5, which conflicts with any installable versions previously reported.