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The Pyrfume Public Data Archive

Wrangled, pre-processed, and curated olfactory psychophysics and biology data.

pyrfume-logo

Intended for use with the pyrfume Python library:

pip install pyrfume

Examples:

import pyrfume

followed by e.g.:

# Load all the data from Bushdid et al, 2014 ("Humans Can Discriminate More than 1 Trillion Olfactory Stimuli")
molecules = pyrfume.load_data('bushdid_2014/molecules.csv')
mixtures = pyrfume.load_data('bushdid_2014/mixtures.csv')
behavior = pyrfume.load_data('bushdid_2014/behavior.csv')

or e.g.:

# Load all the data from Snitz et al, 2013 ("Predicting Odor Perceptual Similarity from Odor Structure")
molecules = pyrfume.load_data('snitz_2013/molecules.csv')
behavior = pyrfume.load_data('snitz_2013/behavior.csv')

Analogous examples can be found here for other datasets.

Current inventory:

abraham_2012 <human> <threshold> <academic>
ahmed_2018 <receptorResponse> <academic>
arctander_1960 <human> <odorCharacter>
aromadb <human> <odorCharacter>
arshamian_2022 <human> <pleasantness> <academic>
bolding_2018 <rodent> <academic>
burton_2022 <rodent> <receptorResponse> <academic>
bushdid_2014 <human> <odorCharacter> <academic>
chae_2019 <rodent> <receptorResponse> <academic>
dravnieks_1985 <human> <odorCharacter> <academic>
flavordb <human> <odorCharacter>
flavornet <human> <odorCharacter>
foodb <human> <odorCharacter>
foodcomex
fragrancedb
freesolve <human> <odorCharacter>
goodscents <human> <odorCharacter>
gras
haddad_2008 <human> <rodent> <academic>
ifra_2019 <human> <odorCharacter>
iurilli_2017 <rodent> <academic>
jones_2019 <rodent> <receptorResponse> <academic> <threshold>
keller_2012 <human> <intensity> <pleasantness> <odorCharacter> <threshold> <academic>
keller_2016 <human> <intensity> <pleasantness> <familiarity> <odorCharacter> <academic>
knapsack
leffingwell <human> <odorCharacter>
leon <rodent> <imaging> <olfactoryBulb>
ma_2012 <rodent> <receptorResponse> <academic>
ma_2021 <human> <intensity> <pleasantness> <mixtures> <academic>
mainland_2015 <human> <receptorResponse> <academic>
manoel_2021 <rodent> <odorCharacter> <academic>
mayhew_2022 <human> <academic>
nagappan_2021 <rodent> <academic> <electrophysiology>
nakayama_2022 <rodent> <odorCharacter> <academic>
nat_geo_1986 <human> <odorCharacter>
nhanes_2014 <human> <odorCharacter>
optical_rotation
prestwick
ravia_2020 <human> <odorCharacter> <mixtures> <academic>
scott_2014 <rodent> <academic>
sharma_2021a <odorCharacter>
sharma_2021b <human> <odorCharacter>
sigma_2014 <human> <odorCharacter>
slone_2017 <harpegnathos> <receptorResponse> <academic>
snitz_2013 <human> <odorCharacter> <mixtures> <academic>
snitz_2019 <human> <intensity> <odorCharacter> <academic>
soh_2013 <rodent>
superscent
t3db
wakayama_2019 <human> <intensity>
weiss_2012 <human> <odorCharacter> <academic>
yu_2015 <receptorResponse> <academic>

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