Fixed the kegg_blacklist bug (kegg_blacklist.txt pathways would not … #108
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…be added to blacklist), removed report_options.yml from usage and schema, changed the skip_pathway_analysis parameter to not skip by default
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I am not sure how to make the pipeline call certain pathways, so I could not actually check if the blacklisting itself works (i.e. if pathways on the blacklist are skipped during analysis); I only verified that the pathways from the blacklist.txt file are added to the blacklist during computation. |
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Fixed the kegg_blacklist bug (kegg_blacklist.txt pathways would not be added to blacklist), removed report_options.yml from usage and schema, changed the skip_pathway_analysis parameter to not skip by default
PR checklist
nextflow run . -profile test,docker).docsis updatedCHANGELOG.mdis updatedREADME.mdis updated