Error running Obtain_rank_score.R

[mcgml]

Hi

I am frequently running into a problem with Obtain_rank_score.R where the script crashes giving exit code 255 and error message below.

assertion !pthread_create(&thr->thrH, &attr, rout, arg) failed, line 119 of file /mnt/storage/home/XXXX/scratch/R-Lang/ATLAS-Build/../ATLAS//src/threads/ATL_thread_start.c

When I re-run the command with the same arguments all works fine so I know it is not the data but seems to be something with multithreading?

Here is the command

Rscript ~/apps/QUAIL/Obtain_rank_score.R --pheno data/phenotypes_quail_pheno.txt --covar data/phenotypes_quail_covar.txt --output data/pheno_rank_score.txt --num_levels 2000 --num_cores 1

Any ideas how to fix?

Thanks
Matt

[mcgml]

This issue is discussed here and is related to ATLAS