Option to print just CDR3s

[sinkovit]

When creating very large synthetic repertoires, sometimes we want to save space and generate just the CDR3s. I found a way to modify the code to comment out the lines that write out the full sequences (lines 542 and 612 in the version of GenModel.cpp from late February)

outfile_ind_seq<<seq<<";"<<sequence.first<<endl;
outfile_ind_seq<<index<<";"<<(*iter).first<<endl;

Would it be possible to add a command line option to control this behavior (e.g. --no_full_seq or --crd3_only)?

[qmarcou]

Hi @sinkovit ,
Yes that should be doable, I'll try and add a more general command line argument to select desired output features

[sinkovit]

Thank you, this is much appreciated.

…

-- Bob From: qmarcou <notifications@github.com> Reply-To: qmarcou/IGoR <reply@reply.github.com> Date: Saturday, August 25, 2018 at 12:14 PM To: qmarcou/IGoR <IGoR@noreply.github.com> Cc: "Sinkovits, Robert" <sinkovit@sdsc.edu>, Mention <mention@noreply.github.com> Subject: Re: [qmarcou/IGoR] Option to print just CDR3s (#15) Hi @sinkovit<https://github.com/sinkovit> , Yes that should be doable, I'll try and add a more general command line argument to select desired output features — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub<#15 (comment)>, or mute the thread<https://github.com/notifications/unsubscribe-auth/AE_YMN3GQcwKJbOz88ncZkIBWbnO8hwyks5uUaIlgaJpZM4VH5_6>.