Description

Singularity container defintion files and necessary commands to build those containers.

The containers are automatically built after commit and are available for download at Singularity Hub.

Building

The core bioinformatics container is published to (Singularity) Sylabs registry and can be pulled using:

singularity pull library://raivivek/default/bio-images:core

If instead you wish to add additional options/tools to the base image, use the following in your Singularity definition file:

BootStrap: library
From: raivivek/default/bio-images:core
IncludeCmd: yes

The repository uses this formula to build analysis specific images as well. For instance, you can download ATAC-seq, RNA-seq, and Single-cell analysis relevant images as following:

singularity pull library://raivivek/default/bio-images:atac

singularity pull library://raivivek/default/bio-images:rna

singularity pull library://raivivek/default/bio-images:singlecell