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MUSCLE.out
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Started Sat May 26 02:33:51 2018
/nfs/public/ro/es/appbin/linux-x86_64/muscle-3.8.31/muscle -in muscle-I20180526-023349-0479-63424175-p2m.sequence -verbose -log muscle-I20180526-023349-0479-63424175-p2m.output -quiet -html -out muscle-I20180526-023349-0479-63424175-p2m.html
Alphabet Amino
MUSCLE v3.8.31 by Robert C. Edgar
http://www.drive5.com/muscle
Profile-profile score LE
Max iterations 8
Max trees 1
Max time (No limit)
Max MB 4294966241
Gap open -2.9
Gap extend (dimer) 0
Gap ambig factor 0
Gap ambig penalty -0
Center (LE) -0.52
Term gaps Half
Smooth window length 7
Refine window length 200
Min anchor spacing 32
Min diag length (lambda) 24
Diag margin (mu) 5
Min diag break 1
Hydrophobic window 5
Hydrophobic gap factor 1.2
Smooth score ceiling 3
Min best col score 2
Min anchor score 1
SUEFF 0.1
Brenner root MSA False
Normalize counts True
Diagonals (1) False
Diagonals (2) False
Anchors True
MSF output format False
Phylip interleaved False
Phylip sequential False
ClustalW output format False
Catch exceptions True
Quiet True
Refine False
ProdfDB False
Low complexity profiles True
Objective score SPM
Distance method (1) Kmer6_6
Clustering method (1) UPGMB
Root method (1) Pseudo
Sequence weighting (1) ClustalW
Distance method (2) PctIdKimura
Clustering method (2) UPGMB
Root method (2) Pseudo
Sequence weighting (2) ClustalW
Elapsed time 00:00:00 Peak memory use 11 MB(-1%) Iteration 1 K-mer dist pass 1
Elapsed time 00:00:00 Peak memory use 11 MB(-1%) Iteration 1 K-mer dist pass 2
Align: (XP_016785970.2 breast cancer type 1 susceptibility protein homolog isoform X2 [Pan troglodytes]) (NP_001288687.1 breast cancer type 1 susceptibility protein [Pan paniscus])
Align: (. mRNA ID: NM_007294, FRAME 2) (XP_016785970.2 breast cancer type 1 susceptibility protein homolog isoform X2 [Pan troglodytes],NP_001288687.1 breast cancer type 1 susceptibility protein [Pan paniscus])
Align: (XP_003778880.2 breast cancer type 1 susceptibility protein isoform X1 [Pongo abelii]) (. mRNA ID: NM_007294, FRAME 2,XP_016785970.2 breast cancer type 1 susceptibility protein homolog isoform X2 [Pan troglodytes],NP_001288687.1 breast cancer type 1 susceptibility protein [Pan paniscus])
Elapsed time 00:00:01 Peak memory use 24 MB(-2%) Iteration 1 Align node
Elapsed time 00:00:01 Peak memory use 24 MB(-2%) Iteration 1 Root alignment
Elapsed time 00:00:01 Peak memory use 24 MB(-2%) Iteration 2 Root alignment
Anchor columns found 50
DP area saved by anchors 94.8%
Elapsed time 00:00:01 Peak memory use 24 MB(-2%) Iteration 3 Refine biparts
Elapsed time 00:00:01 Peak memory use 24 MB(-2%) Iteration 4 Refine biparts
Elapsed time 00:00:01 Peak memory use 24 MB(-2%) Iteration 5 Refine biparts
Elapsed time 00:00:01 Peak memory use 24 MB(-2%) Iteration 6 Refine biparts
Elapsed time 00:00:01 Peak memory use 24 MB(-2%) Iteration 7 Refine biparts
Elapsed time 00:00:01 Peak memory use 24 MB(-2%) Iteration 8 Refine biparts
Elapsed time 00:00:01 Peak memory use 24 MB(-2%) Iteration 9 Refine biparts
Elapsed time 00:00:01 Peak memory use 24 MB(-2%) Iteration 10 Refine biparts
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Elapsed time 00:00:01 Peak memory use 24 MB(-2%) Iteration 13 Refine biparts
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Elapsed time 00:00:01 Peak memory use 24 MB(-2%) Iteration 15 Refine biparts
Elapsed time 00:00:01 Peak memory use 24 MB(-2%) Iteration 16 Refine biparts
Elapsed time 00:00:01 Peak memory use 24 MB(-2%) Iteration 17 Refine biparts
Elapsed time 00:00:01 Peak memory use 24 MB(-2%) Iteration 18 Refine biparts
Elapsed time 00:00:01 Peak memory use 24 MB(-2%) Iteration 19 Refine biparts
Elapsed time 00:00:01 Peak memory use 24 MB(-2%) Iteration 20 Refine biparts
Elapsed time 00:00:01 Peak memory use 24 MB(-2%) Iteration 21 Refine biparts
Elapsed time 00:00:01 Peak memory use 24 MB(-2%) Iteration 22 Refine biparts
Elapsed time 00:00:01 Peak memory use 24 MB(-2%) Iteration 23 Refine biparts
Elapsed time 00:00:01 Peak memory use 24 MB(-2%) Iteration 24 Refine biparts
Elapsed time 00:00:01 Peak memory use 24 MB(-2%) Iteration 25 Refine biparts
Elapsed time 00:00:01 Peak memory use 24 MB(-2%) Iteration 26 Refine biparts
Elapsed time 00:00:01 Peak memory use 24 MB(-2%) Iteration 27 Refine biparts
Elapsed time 00:00:01 Peak memory use 24 MB(-2%) Iteration 28 Refine biparts
Elapsed time 00:00:01 Peak memory use 24 MB(-2%) Iteration 29 Refine biparts
Elapsed time 00:00:01 Peak memory use 24 MB(-2%) Iteration 30 Refine biparts
Elapsed time 00:00:01 Peak memory use 24 MB(-2%) Iteration 31 Refine biparts
Elapsed time 00:00:01 Peak memory use 24 MB(-2%) Iteration 32 Refine biparts
Elapsed time 00:00:01 Peak memory use 24 MB(-2%) Iteration 33 Refine biparts
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Elapsed time 00:00:01 Peak memory use 24 MB(-2%) Iteration 35 Refine biparts
Elapsed time 00:00:01 Peak memory use 24 MB(-2%) Iteration 36 Refine biparts
Elapsed time 00:00:01 Peak memory use 24 MB(-2%) Iteration 37 Refine biparts
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Elapsed time 00:00:01 Peak memory use 24 MB(-2%) Iteration 47 Refine biparts
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Elapsed time 00:00:01 Peak memory use 24 MB(-2%) Iteration 50 Refine biparts
Elapsed time 00:00:01 Peak memory use 24 MB(-2%) Iteration 51 Refine biparts
Elapsed time 00:00:01 Peak memory use 24 MB(-2%) Iteration 52 Refine biparts
Elapsed time 00:00:01 Peak memory use 24 MB(-2%) Iteration 53 Refine biparts
Finished Sat May 26 02:33:52 2018