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@ratan-lab

ratan-lab

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  1. sumo sumo Public

    Subtyping tool for multi-omic data

    Python 13 1

  2. BaitSTR BaitSTR Public

    Automate the discovery of exact short tandem repeats (and its flanking region) from Illumina fastq sequences.

    C 5 1

  3. indelMINER indelMINER Public

    Identify indels from BAM files.

    C 2 1

  4. Workflows Workflows Public

    WDL workflows

    WDL 1

Repositories

Showing 10 of 12 repositories
  • sumo_helper Public

    Scripts to add functionality, diagnose problems and augment analyses done using SUMO

    ratan-lab/sumo_helper’s past year of commit activity
    R 1 1 0 0 Updated May 10, 2023
  • BIMS6000_R_activity Public

    R activity for the BIMS 6000 course

    ratan-lab/BIMS6000_R_activity’s past year of commit activity
    Lua 0 0 1 0 Updated Apr 18, 2023
  • CHD_workflow Public
    ratan-lab/CHD_workflow’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Mar 15, 2023
  • sumo Public

    Subtyping tool for multi-omic data

    ratan-lab/sumo’s past year of commit activity
    Python 13 MIT 1 12 0 Updated Jul 6, 2022
  • Workflows Public

    WDL workflows

    ratan-lab/Workflows’s past year of commit activity
    WDL 1 0 1 0 Updated Mar 29, 2022
  • indelMINER Public

    Identify indels from BAM files.

    ratan-lab/indelMINER’s past year of commit activity
    C 2 MIT 1 5 0 Updated Jan 26, 2022
  • sumo_analysis Public

    Analysis and figures for SUMO manuscript

    ratan-lab/sumo_analysis’s past year of commit activity
    R 0 GPL-3.0 0 0 0 Updated Dec 6, 2021
  • BaitSTR Public

    Automate the discovery of exact short tandem repeats (and its flanking region) from Illumina fastq sequences.

    ratan-lab/BaitSTR’s past year of commit activity
    C 5 MIT 1 1 0 Updated Apr 13, 2020
  • mecs Public

    Implementation of method used in Wong et al. for Error corrected DNA sequencing

    ratan-lab/mecs’s past year of commit activity
    Python 0 0 2 0 Updated Nov 13, 2019
  • rdcleanr Public

    Implementation of a single position models to remove bias in NGS

    ratan-lab/rdcleanr’s past year of commit activity
    Python 2 MIT 0 1 0 Updated Dec 20, 2018
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