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1. Kalan-Lab/zol Kalan-Lab/zol Public

   zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)

   Python 40 4

2. Kalan-Lab/lsaBGC Kalan-Lab/lsaBGC Public

   lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters

   Python 34 4

3. skDER skDER Public

   skDER: efficient & high-resolution dereplication of microbial genomes to select representatives for comparative genomics and metagenomics.

   Python 31 1

4. broadinstitute/ConSequences broadinstitute/ConSequences Public

   Suite to delineate contiguous and conserved sequences from assemblies and search for their presence in raw sequencing data.

   Python 2 1

5. broadinstitute/seQuoia broadinstitute/seQuoia Public

   A framework for diverse omics workflows, primarily focused on QC, processing and analysis of bacterial genomic sequencing sets.

   Python 2 2

6. Kalan-Lab/codoff Kalan-Lab/codoff Public

   codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, phage, etc.) relative to the full genome.

   Python 5