qsub 1.1.0

[rcannood]

qsub 1.1.0 has been submitted to CRAN.

Changes:

• MINOR CHANGE: There is now an option to compress the output files, which is turned
  on by default.

• MINOR CHANGE: Allow unix systems to use rsync instead of cp for fetching the qsub output.

• BUG FIX: Fix qsub_retrieve() when processing the output; it did not take into account that
  batch_tasks could not be equal to 1.

• MINOR CHANGE: qsub_retrieve() now uses pbapply when loading in the output.

• BUG FIX: Test ssh connection pointer before using it.

• BUG FIX: Do not remove the first line of an error file.

• MINOR CHANGE: Use absolute paths to output standard output and error logs (Error and output log paths cause scripts to fail #16, suggested by @mmehan).

• MINOR CHANGE; Allow rsync to also use the username@host:port notation (Error and output log paths cause scripts to fail #16, suggested by @mmehan).

[codecov-io]

Codecov Report

Merging #17 into master will increase coverage by 5.38%.
The diff coverage is 67.21%.

@@            Coverage Diff             @@
##           master      #17      +/-   ##
==========================================
+ Coverage   62.33%   67.71%   +5.38%     
==========================================
  Files           5        7       +2     
  Lines         446      508      +62     
==========================================
+ Hits          278      344      +66     
+ Misses        168      164       -4

Impacted Files	Coverage Δ
R/qsub_config.R	91.52% <ø> (-0.15%)	⬇️
R/qstat_j.R	0% <0%> (ø)	⬆️
R/qacct.R	0% <0%> (ø)	⬆️
R/fetch_hostname_from_config.R	38.09% <38.09%> (ø)
R/qsub_run.R	84.18% <70.73%> (-0.67%)	⬇️
R/ssh.R	60.37% <74.28%> (+21.09%)	⬆️
R/read_ssh_config.R	83.33% <83.33%> (ø)

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[rcannood]

On its way to CRAN