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Popular repositories

  1. NGS-Tools-Mutect NGS-Tools-Mutect Public archive

    Perl wrapper code for the MuTect somatic classifier

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  2. plotting.general plotting.general Public

    Publication ready plotting functions using ggplot2

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  3. NGS.Tools.BICseq NGS.Tools.BICseq Public archive

    A custom R package that wraps the BICseq copy number calling algorithm.

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  4. ncov_parser ncov_parser Public archive

    A set of libraries for parsing genomic data from the ncov-tools project

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  5. ncov2019-artic-nf ncov2019-artic-nf Public

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    A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019

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  6. NGS-Tools-Pindel NGS-Tools-Pindel Public archive

    Perl package for Pindel INDEL caller

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