Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

rdkit installation problem in mac os catelina #98

Closed
yellaboina opened this issue Aug 28, 2020 · 2 comments
Closed

rdkit installation problem in mac os catelina #98

yellaboina opened this issue Aug 28, 2020 · 2 comments

Comments

@yellaboina
Copy link

==> Installing rdkit from rdkit/rdkit
==> Downloading https://github.com/rdkit/rdkit/archive/Release_2020_03_4.tar.gz
Already downloaded: /Users/sailu/Library/Caches/Homebrew/downloads/4839f1a506ffb63c0c0ad7e6fac8fb3037e44075a4d0fde085d1eb71ed06b19a--rdkit-Release_2020_03_4.tar.gz
detected clang C++ compiler
==> cmake -DRDK_INSTALL_INTREE=OFF -DRDK_BUILD_CPP_TESTS=OFF -DRDK_INSTALL_STATIC_LIBS=OFF -DBoost_NO_BOOST_CMAKE=ON -DPYTHON_EXECUTABLE='/usr/local/opt/python@3.8/bin/python3' -DPY
Last 15 lines from /Users/sailu/Library/Logs/Homebrew/rdkit/01.cmake:
Call Stack (most recent call first):
CMakeLists.txt:255 (find_package)

CMake Error at /usr/local/Cellar/cmake/3.18.2/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:165 (message):
Could NOT find Boost (missing: python) (found suitable version "1.73.0",
minimum required is "1.56.0")
Call Stack (most recent call first):
/usr/local/Cellar/cmake/3.18.2/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:458 (_FPHSA_FAILURE_MESSAGE)
/usr/local/Cellar/cmake/3.18.2/share/cmake/Modules/FindBoost.cmake:2177 (find_package_handle_standard_args)
CMakeLists.txt:263 (find_package)

-- Configuring incomplete, errors occurred!
See also "/tmp/rdkit-20200828-14861-r5jjpk/rdkit-Release_2020_03_4/CMakeFiles/CMakeOutput.log".

If reporting this issue please do so at (not Homebrew/brew or Homebrew/core):
https://github.com/rdkit/homebrew-rdkit/issues

These open issues may also help:
Add rdkit.egg-info directory #97

@UnixJunkie
Copy link
Collaborator

Try to reinstall everything. E.g.

brew update
brew remove boost boost-python3 rdkit
brew install rdkit --with-python3

@UnixJunkie
Copy link
Collaborator

You could try this also:

# backup your brew installed packages list
brew list --formula > my_brew_packages.txt
# uninstall all of them
brew uninstall --force $(cat my_brew_packages.txt)
# install rdkit from scratch
brew install rdkit --with-python3

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants