Version 3.6.3

• Features:
  • Diagram export includes more format options (svg, png, jpg/jpeg, gif, sbgn, sbml, biopax levels 2 and 3)
  • Diagram export dialog supports higher resolution images.
  • Flagging mechanism updated to use SolR methods provided through the ContentService API (achieves higher precision in a more efficient strategy).
  • Flagging supports interaction data. Support to include/exclude the usage of interaction data in this feature.
• Improvements
  • Image buttons in the viewport updated to higher resolution.
  • EHLD viewer supports the inclusion of the icon identifiers following the pattern "R-ICO-0\d+"
• Bug fixes:
  • Search bar is now shown correctly inside resources from third parties using the Foundation Framework
  • Protein drug rendering
  • Rendering of normal reactions that were using the fadeout profile

Version 3.6.0

• Features:
  • Search updated to use Solr. Searches are now performed in both diagram and global scope to enhance user experience both inside the Pathway Browser and when this widget is used in a third party web application.
  • Glyph for ProteinDrug, ChemicalDrug, EntitySetDrug, ComplexDrug and RNADrug.
  • Advanced flagging mechanism that relies on the ContentService.
  • Bug fixes:
    • Projection between client graph and layout (no fadeout objects projection to graph).
    • Show drugs in the participating molecules tab.

Version 3.5.0

• Features:
  • Events about diagram and analysis profile changes are now fired outside the viewer.
  • Enabling flagging from the search interface.
  • Addressing styling issues when the widget is used in 3rd party applications.
  • Bug fixes:
    • Diagram key selection now resets on loading of a new diagram.
    • Odd behaviour with mouse selection fixed.

Version 3.4.4

• New features:
  • Rendering encapsulated process nodes.
  • Fitting text in the encapsulated pathways glyph.
  • Splitting encapsulated pathway glyph to introduce the diagrammed subpathway.
  • EncapsulatedNode glyph added as renderableClass.
  • Display names in diagram key updated.
  • Diagram key updated to include more glyphs.
  • ChemicalDrug rendering updated.

Version 3.4.3

• New features:
  • Changed to static initialisation and added documentation.
  • More user-friendly error messages.
  • GWT updated to 2.8.2
  • minor change in psicquic url.
  • Loading ZINC images added.
  • Bug fixes:
    • Hovering oddity in cases the widget is included in a long (scrollable) web pages.
    • Added support for getting the relative position using different strategies (one for Chrome and one for all other browsers).
    • NodeAttachments can not be hovered when they are invisible.
    • Help now appears only on the first expression analysis.
    • Help now appears only on the first expression analysis.
    • In case the entity for selection is not in the graph, the previous selection has to be reset.

Version 3.4.2

• New features:
  • Watermark image updated to the new logo.
  • Watermark URL updated to use https.
  • All molecule entries in the context menu are now sorted by display name.

Version 3.4.1

• New features:

  • Connecting to the ContentService RESTFul API (https://reactome.org/ContentService).
  • Mechanism to disable zoom or panning (depending on device) in regular diagrams when window is scrolling. This has been done as a request from third parties.
  • Added search clear button.
  • Tooltips added on the class icons in search results.
  • Static Illustration button is disabled when an EHLD is shown.
  • Error messages updated to include more details.
  • Adding support for the new chemical drugs.

• Fixed bugs:

  • PPTX export now works on mobile devices.
  • Removed the tooltip appearing on top of EHLDs in Safari showing the stID of the HLP
  • Diagram export dialog is now centered properly in Firefox.
  • If Safari is detected and the tag is present, then EHLDs are disabled and we fall back to the classic diagrams.

Version 3.3.0

• Supports Enhanced High Level Diagrams (EHLD)
  • Loads diagram SVGs and makes them interactive
  • Subpathways highlighting for hovering and selection
  • Analysis overlay for enrichment and expression
• ZINC structures for closer views displayed when ZINC interactors are loaded
• Added Custom interactors delete confirmation feature
• Added export to PPTX button
• Various bug fixed
• Uses GWT 2.8.0 with newer MVN plugin

Version 3.2.0

• MI Overlay updated to support analysis results overlay.
  • For those proteins/chemicals with hit interactors, a ribbon is shown in the top-right corner for visual reinforcement.
• Interactors tab in the entities context menu includes analysis overlay and also expression values for the different time-series columns.
• Custom resources UI added as part of the interactors tab in the settings menu which integrates user documentation for both; the method and the accepted data formats.
  • Upload your files (file or URL pointing to the data).
  • Paste your data.
  • Add a custom PSICQUIC resource.
• Custom data appears as a new resource in the "Custom Resources" section and can be used as the "IntAct/Static" or PSICQUIC options.
• When a custom resource is selected, the submitted data present in the displayed pathway can be found via the diagram search option.

Version 3.1.0

First production-ready version for Reactome Diagram Viewer containing interactors