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Mccalluc/merge facets #2073

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Sep 5, 2017
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63 changes: 57 additions & 6 deletions refinery/ui/source/js/user-file-browser/services/factory.js
Original file line number Diff line number Diff line change
Expand Up @@ -20,7 +20,11 @@
createColumnDefs: createColumnDefs,
createData: createData,
createFilters: createFilters,
getUserFiles: getUserFiles
getUserFiles: getUserFiles,
_mergeAndAddObject: _mergeAndAddObject,
_objectToNameValue: _objectToNameValue,
_nameValueToObject: _nameValueToObject,
_mergeAndAddNameValues: _mergeAndAddNameValues
};
var URL = 'url';
return service;
Expand Down Expand Up @@ -72,6 +76,8 @@
var internalNames = Object.keys(node);
internalNames.forEach(function (internalName) {
var display = mapInternalToDisplay(internalName);
// TODO: Name collisions might happen here:
// organism_Characteristics vs organism_Factor_Value
row[display] = node[internalName];
});
row[URL] = row.name;
Expand All @@ -80,19 +86,64 @@
return data;
}

function _mergeAndAddObject (target, extra) {
Object.keys(extra).forEach(function (key) {
if (typeof target[key] === 'undefined') {
target[key] = extra[key];
} else {
target[key] += extra[key];
}
});
}

function _objectToNameValue (object) {
var nv = [];
Object.keys(object).forEach(function (key) {
nv.push({
name: key,
value: object[key]
});
});
return nv;
}

function _nameValueToObject (nameValue) {
var obj = {};
nameValue.forEach(function (nv) {
obj[nv.name] = nv.value;
});
return obj;
}

function _mergeAndAddNameValues (targetNV, extraNV) {
var targetObj = _nameValueToObject(targetNV);
var extraObj = _nameValueToObject(extraNV);
_mergeAndAddObject(targetObj, extraObj);
var newTargetNV = _objectToNameValue(targetObj);
targetNV.length = 0;
newTargetNV.forEach(function (nv) {
targetNV.push(nv);
});
}

function createFilters (solrFacetCounts) {
var filters = {};
Object.keys(solrFacetCounts).forEach(function (key) {
if (solrFacetCounts[key].length > 0) {
// TODO: can't use AttributeOrder (it's per dataset), but this is bad.
var facetObj = solrFacetCounts[key];
var lowerCaseNames = facetObj.map(function (nameCount) {
return nameCount.name.toLowerCase();
}).join(' ');
filters[mapInternalToDisplay(key)] = {
facetObj: facetObj,
lowerCaseNames: lowerCaseNames
};
// "foo_Characteristic" and "foo_Factor_Value" both map to "foo".
var display = mapInternalToDisplay(key);
if (!angular.isDefined(filters[display])) {
filters[display] = {
facetObj: [],
lowerCaseNames: ''
};
}
filters[display].lowerCaseNames += ' ' + lowerCaseNames;
_mergeAndAddNameValues(filters[display].facetObj, facetObj);
}
});
return filters;
Expand Down
138 changes: 94 additions & 44 deletions refinery/ui/source/js/user-file-browser/services/factory.spec.js
Original file line number Diff line number Diff line change
Expand Up @@ -19,6 +19,92 @@
expect(factory).toBeDefined();
});

describe('createData', function () {
it('handles empty', function () {
expect(factory.createData([]))
.toEqual([]);
});

it('handles matching duplicates', function () {
expect(factory.createData([{
name: 'http://example.com/foo.bar',
organism_Characteristics_generic_s: 'dog',
organism_Factor_Value_generic_s: 'dog'
}]))
.toEqual([{
url: 'http://example.com/foo.bar',
name: 'http://example.com/foo.bar', // TODO: This could be removed?
organism: 'dog'
}]);

// TODO: and what if they don't match?
});
});

describe('createFilters', function () {
describe('utils', function () {
it('_mergeAndAddObject', function () {
var a = { a: 1 };
var b = { a: 2, b: 3 };
factory._mergeAndAddObject(a, b);
expect(a).toEqual({
a: 3,
b: 3
});
});
it('_objectToNameValue', function () {
expect(factory._objectToNameValue({
a: 1
})).toEqual([{
name: 'a',
value: 1
}]);
});
it('_nameValueToObject', function () {
expect(factory._nameValueToObject([{
name: 'a',
value: 1
}])).toEqual({
a: 1
});
});
it('_mergeAndAddNameValues', function () {
var a = [{ name: 'a', value: 1 }];
var b = [{ name: 'a', value: 2 }, { name: 'b', value: 3 }];
factory._mergeAndAddNameValues(a, b);
expect(a).toEqual([
{ name: 'a', value: 3 },
{ name: 'b', value: 3 }
]);
});
});
it('handles duplicates', function () {
expect(factory.createFilters(
{
organism_Characteristics_generic_s: [
{ name: 'mouse', value: 1 },
{ name: 'cat', value: 2 }
],
organism_Factor_Value_generic_s: [
{ name: 'mouse', value: 3 },
{ name: 'dog', value: 4 }
]
}
)).toEqual(
{
organism: {
facetObj: [
{ name: 'mouse', value: 4 },
{ name: 'cat', value: 2 },
{ name: 'dog', value: 4 }
],
lowerCaseNames: ' mouse cat mouse dog' // This is ok: Just used for substring search.
}
}
);
});
});

describe('getUserFiles', function () {
var userFiles;

Expand All @@ -29,54 +115,18 @@
) {
userFiles = {
nodes: [
{
REFINERY_ANALYSIS_UUID_6_3_s: 'N/A',
Author_Characteristics_6_3_s: 'McConnell',
REFINERY_WORKFLOW_OUTPUT_6_3_s: 'N/A'
},
{
REFINERY_ANALYSIS_UUID_6_3_s: 'fbc78aaa-1050-403b-858c-a1504a40ef54',
Author_Characteristics_6_3_s: 'McConnell',
REFINERY_WORKFLOW_OUTPUT_6_3_s: '1_test_01'
},
{
REFINERY_ANALYSIS_UUID_6_3_s: '547ac4a0-7d5a-48a9-8859-8620ad94c7a2',
Author_Characteristics_6_3_s: 'McConnell',
REFINERY_WORKFLOW_OUTPUT_6_3_s: '1_test tool out'
}],
{ field: 'value' }
],
attributes: [{
attribute_type: 'Internal',
file_ext: 's',
display_name: 'Output Type',
internal_name: 'REFINERY_WORKFLOW_OUTPUT_6_3_s'
}, {
attribute_type: 'Internal',
field: 'Internal',
file_ext: 's',
display_name: 'Analysis',
internal_name: 'REFINERY_ANALYSIS_UUID_6_3_s'
}, {
attribute_type: 'Characteristics',
file_ext: 's',
display_name: 'Author',
internal_name: 'Author_Characteristics_6_3_s'
display_name: 'foo bar',
internal_name: 'REFINERY_foo_bar'
}],
facet_field_counts: {
REFINERY_WORKFLOW_OUTPUT_6_3_s: {
'1_test_04': 2,
'1_test_02': 2
},
REFINERY_ANALYSIS_UUID_6_3_s: {
'5d2311d1-6d8c-4857-bc57-2f25563aee91': 4
},
Author_Characteristics_6_3_s: {
Vezza: 1,
'Harslem/Heafner': 1,
McConnell: 6,
'Crocker + McConnell': 4,
Crocker: 4,
'Postel/Cerf': 1,
Cotton: 1
}
field: [
{ name: 'name', count: 42 }
]
}
};
spyOn(userFileService, 'query').and.callFake(function () {
Expand Down