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v1.7.3
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@agudys agudys released this 24 Jan 22:39
· 52 commits to master since this release
v1.7.3
37a713c

Added:

  • For performance reasons upper triangle (with diagonal) of distance matrix in all2all mode is no longer saved.
  • Possibility to specify low threshold of k-mer minhash filter (-f-start parameter).
  • When loading genome files, exact filenames are examined first. If this fails, an attempt to add predefined extensions is made.
  • Added new distance measure -mash-query which is a mash distance calculated w.r.t. a query length (use if the query is much shorter than database sequences).
  • C++11 compatibility (compiles with G++ 4.8.5).

Fixed:

  • Rare bug in hashtable when k-mer containing only T bases was treated as an empty entry. Now an empty item is indicated by a special value instead of a special key.
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