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1. daphnia_magna_metagenome daphnia_magna_metagenome Public

   All scripts used for data analysis and visualization in "Characterization of core bacterial species in the Daphnia magna microbiota using shotgun metagenomics".

   R 2

2. bioutils bioutils Public

   A collection of Python code that I use more often than not

   Python

3. circadian_microbiome circadian_microbiome Public

   This project contains code for: Pfenning-Butterworth A.C, Cooper R.O., and Cressler C.E. Diel rhythm influences microbiota composition in two zooplankton species.

4. daphnia_multigenerational_antibiotics daphnia_multigenerational_antibiotics Public

   Multiple generations of antibiotic exposure and isolation influence host fitness and the microbiome in a model zooplankton species. Cooper RO, Tjards S, Hotovy J, Nguyen DT, Cressler CE.