RDP-Tools

A Python command-line utility for programmatically interacting with RiboSeq.Orgs Data Portal.

Installation

Install RDP-Tools by running:

pip install RiboSeq-DP-Tools

or:

docker pull quay.io/jackcurragh/rdp-tools

RDP-Tools is intended to be used as a command line tool.

To collapse a FASTQ file, run:

RDP-Tools collapse <input_FASTQ>

To inflate a FASTA file, run:

RDP-Tools inflate <input_FASTA>

To inflate a FASTA to a FASTQ file, run:

RDP-Tools inflate <input_FASTA> -o <output_file>.fastq/fq

To inflate a BAM file, run:

RDP-Tools inflate <input_BAM>

For more information on how to use RDP-Tools, see the documentation_ or use :code:--help

Name		Name	Last commit message	Last commit date
Latest commit History 51 Commits
.github/workflows		.github/workflows
RDPTools		RDPTools
docs		docs
tests		tests
.gitignore		.gitignore
.readthedocs.yaml		.readthedocs.yaml
LICENSE		LICENSE
Makefile		Makefile
README.md		README.md
conf.py		conf.py
environment.yml		environment.yml
make.bat		make.bat
requirements.txt		requirements.txt
setup.cfg		setup.cfg
setup.py		setup.py