Merge model_select_params and inference_params into a list of experiments

[richelbilderbeek]

• Depends on Move 'evidence_epsilon' in 'est_evidence_mcmc' #87
• Depends on beautier
• Depends on beastier
• Depends on babette
• Depends on mcbette
• an experiment must have a beast2_options_inference and beast2_options_est_evidence, Add params needed for the estimation of evidence in experiment #80

[richelbilderbeek]

Yes, this is the superior way to go: better words, re-use structures from beautier and beastier.

Only the word experiment can be improved... 🤔

But well, it's good, good enough for now 🏎️ 🏎️

[richelbilderbeek]

Old:

pir_run(
  phylogeny = ...,
  twinning_params = ...,
  alignment_params = ...,
  model_select_params = ...,
  inference_params = ...,
  error_measure_params = ...
)

New:

pir_run(
  phylogeny = ...,
  twinning_params = ...,
  alignment_params = ...,
  experiments = ...,
  error_measure_params = ...
)

[richelbilderbeek]

Documented at https://github.com/richelbilderbeek/pirouette/blob/develop/doc/how_to_setup_inference_selection.md.

[richelbilderbeek]

Done!

Sure, there is more to be done, but there are tests confirming this Issue is mostly done.