Major updates #32
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Major updates #32
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added 30 commits
January 8, 2018 11:42
…e instances. This provides functionality similar to seaborn, so matplotlib.Axes can be provided into which a plot is drawn.
of residue indexes
added 7 commits
February 6, 2018 09:40
…ate Euclidean distance
1 similar comment
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Note to self: I'm up to e0c3616 no obvious problems so far! |
hlasimpk
reviewed
Mar 17, 2018
| """The diversity of an alignment defined by :math:`\sqrt{N}/L`. | ||
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| ``N`` equals the number of sequences in | ||
| thethe alignment and ``L`` the sequence length |
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Will be added in a later PR.
hlasimpk
approved these changes
Mar 17, 2018
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Added
conkit.plotsubpackage refactored to allowmatplotlibaccess ofFigureinstances. This providesfunctionality similar to
seaborn, somatplotlib.Axescan be provided into which a plot is drawn.ContactMap.as_listfunction to represent the contact map as a 2D-list of residue indexesconkit.misc.normalizefunction to apply Feature scaling normalizationCONTRIB.rstfile to list all contributorsSequenceFile.diversityproperty defined by :math:\sqrt{N}/LContactMap.reindexto reindex a contact map given a new starting indexContactMap.singletonsreturns a copy of the contact map with singleton contacts, i.e. ones without neighborsChanged
conkit.plotin accordance to necessary changes for aboveContactMapFigurenow acceptslimparameters for axes limitsContactMapFigureandContacctMapChordFigureimproved to better space marker size