1.2.4

Changed

Extend getPolyAStandardizedSignal

• add mode change between median and mean
• standardization parameters can be added as parameters

1.2.3

Added

• getPolyAStandardizedSignal(self, readid : str, polyAstart : int, polyAend : int) -> np.ndarray

Standardize the read signal of the provided read with the polyA.
This function uses the median and mad to standardize the read with the polyA signal.
After standardization the polyA signal will have a mean of 108.901413 and a stdev of 2.676522.

Parameter

readid : str
polyAstart : int

• included starting index of the polyA signal in the read

polyAend : int

• excluded ending index of the polyA signal in the read

Returns

standardizedSignal : np.ndarray

• polyA standardized read signal

1.2.1

Changed

Update Versioneer
README fixes here and there

Added

• Created https://github.com/JannesSP/read5_ont without the slow5/pod5 support.
  • But, Python3.11 support in conda

1.2.0

Changed Conda Recipe

• pod5 is now installed via conda instead of pip

1.1.9

Move python requirements in setup.py to 'python_requires' instead of 'install_requires'

1.1.8

Add test files to sdist by adding "graft tests" to MANIFEST.in

1.1.7

Added

• getFilePath() method to access the _filepath variable
• activate tests for conda package build

1.1.6

Fixed Imports of Conda Package

1.1.5

Update README.rst for pipy

1.1.4

Add README.rst for pipy