singlecellTDA

The Focus of the repository is to do the following before performing Downstream Analysis.

Data Pre-Processing

1. Feature Selection
2. Dimensionality Reduction
3. Data Visualization

Down Stream Analysis

1. Cell Group Annotation
2. Identifying Infered Trejectories through topomap/mapper/tomato. Identify Major Topological Change during different time course.
3. Identify key genes driver genes for the differentiation.
4. Analysising different interesting areas in Single Cell Genomics. Perturbations between treated/condition/simulated and untreated/control/unsimulated samples.