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Add rworkflows #926

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May 23, 2024
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4 changes: 4 additions & 0 deletions .Rbuildignore
Original file line number Diff line number Diff line change
Expand Up @@ -27,3 +27,7 @@ colp_search.R
notes-email-question.R
log.Rmd
^CRAN-SUBMISSION$

node_modules$
package-lock\.json$
package\.json$
68 changes: 0 additions & 68 deletions .github/workflows/R-CMD-check.yaml

This file was deleted.

52 changes: 52 additions & 0 deletions .github/workflows/rworkflows.yml
Original file line number Diff line number Diff line change
@@ -0,0 +1,52 @@
name: rworkflows
'on':
push:
branches:
- master
- main
- devel
- RELEASE_**
pull_request:
branches:
- master
- main
- devel
- RELEASE_**
jobs:
rworkflows:
permissions: write-all
runs-on: ${{ matrix.config.os }}
name: ${{ matrix.config.os }} (${{ matrix.config.r }})
container: ${{ matrix.config.cont }}
strategy:
fail-fast: ${{ false }}
matrix:
config:
- os: ubuntu-latest
bioc: devel
r: auto
cont: ghcr.io/bioconductor/bioconductor_docker:devel
rspm: ~
- os: macOS-latest
bioc: release
r: auto
cont: ~
rspm: ~
- os: windows-latest
bioc: release
r: auto
cont: ~
rspm: ~
steps:
- uses: neurogenomics/rworkflows@master
with:
run_bioccheck: ${{ false }}
run_rcmdcheck: ${{ true }}
as_cran: ${{ true }}
run_vignettes: ${{ true }}
has_testthat: ${{ true }}
run_covr: ${{ true }}
run_pkgdown: ${{ true }}
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
run_docker: ${{ true }}
runner_os: ${{ runner.os }}
2 changes: 1 addition & 1 deletion DESCRIPTION
Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,7 @@ Description: Interacts with a suite of web 'APIs' for taxonomic tasks,
species names, getting taxonomic hierarchies, fetching downstream and
upstream taxonomic names, getting taxonomic synonyms, converting
scientific to common names and vice versa, and more.
Version: 0.9.100
Version: 0.9.101
License: MIT + file LICENSE
URL: https://docs.ropensci.org/taxize/ (website),
https://github.com/ropensci/taxize (devel),
Expand Down
9 changes: 9 additions & 0 deletions NEWS.md
Original file line number Diff line number Diff line change
@@ -1,3 +1,12 @@
taxize 0.9.101

* Add `rworkflows`.
- Update *.Rbuildignore* for `rworkflows`.
- Remove old workflow: *R-CMD-check.yaml*
- Bump `taxize` version.
- Add `rworkflows` status badge to *README*.

=============
taxize 0.9.100
=============

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2 changes: 1 addition & 1 deletion README.Rmd
Original file line number Diff line number Diff line change
Expand Up @@ -16,7 +16,7 @@ knitr::opts_chunk$set(

[![Project Status: Active – The project has reached a stable, usable state and is being actively developed.](https://www.repostatus.org/badges/latest/active.svg)](https://www.repostatus.org/#active)
[![cran checks](https://badges.cranchecks.info/worst/taxize.svg)](https://cran.r-project.org/web/checks/check_results_taxize.html)
[![R-CMD-check](https://github.com/ropensci/taxize/workflows/R-CMD-check/badge.svg)](https://github.com/ropensci/taxize/actions/)
[![rworkflows](https://github.com/ropensci/taxize/workflows/rworkflows/badge.svg)](https://github.com/ropensci/taxize/actions/)
[![codecov](https://codecov.io/gh/ropensci/taxize/branch/master/graph/badge.svg)](https://app.codecov.io/gh/ropensci/taxize)
[![rstudio mirror downloads](https://cranlogs.r-pkg.org/badges/taxize)](https://github.com/r-hub/cranlogs.app)
[![cran version](https://www.r-pkg.org/badges/version/taxize)](https://cran.r-project.org/package=taxize)
Expand Down
18 changes: 9 additions & 9 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -6,7 +6,7 @@ state and is being actively
developed.](https://www.repostatus.org/badges/latest/active.svg)](https://www.repostatus.org/#active)
[![cran
checks](https://badges.cranchecks.info/worst/taxize.svg)](https://cran.r-project.org/web/checks/check_results_taxize.html)
[![R-CMD-check](https://github.com/ropensci/taxize/workflows/R-CMD-check/badge.svg)](https://github.com/ropensci/taxize/actions/)
[![rworkflows](https://github.com/ropensci/taxize/workflows/rworkflows/badge.svg)](https://github.com/ropensci/taxize/actions/)
[![codecov](https://codecov.io/gh/ropensci/taxize/branch/master/graph/badge.svg)](https://app.codecov.io/gh/ropensci/taxize)
[![rstudio mirror
downloads](https://cranlogs.r-pkg.org/badges/taxize)](https://github.com/r-hub/cranlogs.app)
Expand Down Expand Up @@ -193,13 +193,13 @@ we plan to get done for each version.

## Meta

- Please [report any issues or
bugs](https://github.com/ropensci/taxize/issues).
- License: MIT
- Get citation information for `taxize` in R doing
`citation(package = 'taxize')`
- Please note that this package is released with a [Contributor Code
of Conduct](https://ropensci.org/code-of-conduct/). By contributing
to this project, you agree to abide by its terms.
- Please [report any issues or
bugs](https://github.com/ropensci/taxize/issues).
- License: MIT
- Get citation information for `taxize` in R doing
`citation(package = 'taxize')`
- Please note that this package is released with a [Contributor Code of
Conduct](https://ropensci.org/code-of-conduct/). By contributing to
this project, you agree to abide by its terms.

[![rofooter](https://ropensci.org/public_images/github_footer.png)](https://ropensci.org)