Error message when opening packrat project containing Rmd files #552
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This problem was caused by using We believe that this is resolved with #647. |
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Hi,
When I open my R project that is using packrat, I get an error coming from my Rmarkdown files, specifically from particular parameters in the headers.
Quitting from lines 379-381 (4-genes_and_TCR_samples.Rmd)Error in eval(x, envir = envir) : object 'subset_CD3s' not foundError in eval(x, envir = envir) : object 'subset_CD3s' not foundError in eval(x, envir = envir) : object 'subset_CD3s' not foundError in eval(x, envir = envir) : object 'subset_CD3s' not foundError in eval(x, envir = envir) : object 'subset_CD3s' not foundError in eval(x, envir = envir) : object 'subset_CD3s' not foundQuitting from lines 486-488 (4-genes_and_TCR_samples_with_CD3.Rmd)Error in eval(x, envir = envir) : object 'subset_CD3s2' not foundError in eval(x, envir = envir) : object 'subset_CD3s2' not foundError in eval(x, envir = envir) : object 'subset_CD3s2' not foundError in eval(x, envir = envir) : object 'subset_CD3s2' not foundError in eval(x, envir = envir) : object 'subset_CD3s2' not foundError in eval(x, envir = envir) : object 'subset_CD3s2' not foundError in eval(x, envir = envir) : object 'subset_CD3s2' not foundError in eval(x, envir = envir) : object 'subset_CD3s2' not found"subset_CD3s: FALSE" is a parameter in the header of "4-genes_and_TCR_samples.Rmd", and "subset_CD3s2: FALSE" is in the header of "4-genes_and_TCR_samples_with_CD3.Rmd". I have other parameters in the same headers but these don't seem to be causing an error.
What could be the cause of this error and how can I fix it?
Thanks,
Lucy
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