clm() issues a warning message about the formula

[coeusanalytics]

Hi @runehaubo,

I believe this issue is similar to the #34 which relates to a warning regarding formula length. However, this is occurring for the ordinal::clm() function instead. Another user has already raised this in #34 but the issue has since been closed.

Due to this warning, it's causing me issues with rendering tables using another package.

Can this function be fixed as well?

Thanks.

See reproducible example below:

---

# load packages
library(ordinal)
library(dplyr)

# data set
df <- mtcars %>% 
  mutate_all(.funs = ~ factor(.)) %>% 
  mutate(very_very_very_long_variable1 = cyl,
         very_very_very_long_variable2 = vs,
         very_very_very_long_variable3 = gear)

# this produces a warning
clm(formula = very_very_very_long_variable1 ~ very_very_very_long_variable2 + very_very_very_long_variable3,
    data = df)
#> Warning: Using formula(x) is deprecated when x is a character vector of length > 1.
#>   Consider formula(paste(x, collapse = " ")) instead.

# this does not result in a warning
clm(formula = cyl ~ vs + gear,
    data = df)
#> formula: cyl ~ vs + gear
#> data:    df
#> 
#>  link  threshold nobs logLik AIC   niter max.grad cond.H 
#>  logit flexible  32   -15.00 39.99 5(0)  4.85e-07 2.8e+01
#> 
#> Coefficients:
#>    vs1  gear4  gear5 
#> -4.611 -3.180 -3.476 
#> 
#> Threshold coefficients:
#>    4|6    6|8 
#> -5.852 -2.891

^{Created on 2021-08-17 by the reprex package (v2.0.1)}

[runehaubo]

What is your sessionInfo()? Cheers Rune tir. 17. aug. 2021 kl. 04.55 skrev Hung Vo ***@***.***>:

…

Hi @runehaubo <https://github.com/runehaubo>, I believe this issue is similar to the #34 <#34> which relates to a warning regarding formula length. However, this is occurring for the ordinal::clm() function instead. Another user has already raised this in #34 <#34> but the issue has since been closed. Due to this warning, it's causing me issues with rendering tables using another package. Can this function be fixed as well? Thanks. See reproducible example below: ------------------------------ # load packages library(ordinal) library(dplyr) # data setdf <- mtcars %>% mutate_all(.funs = ~ factor(.)) %>% mutate(very_very_very_long_variable1 = cyl, very_very_very_long_variable2 = vs, very_very_very_long_variable3 = gear) # this produces a warning clm(formula = very_very_very_long_variable1 ~ very_very_very_long_variable2 + very_very_very_long_variable3, data = df)#> Warning: Using formula(x) is deprecated when x is a character vector of length > 1.#> Consider formula(paste(x, collapse = " ")) instead. # this does not result in a warning clm(formula = cyl ~ vs + gear, data = df)#> formula: cyl ~ vs + gear#> data: df#> #> link threshold nobs logLik AIC niter max.grad cond.H #> logit flexible 32 -15.00 39.99 5(0) 4.85e-07 2.8e+01#> #> Coefficients:#> vs1 gear4 gear5 #> -4.611 -3.180 -3.476 #> #> Threshold coefficients:#> 4|6 6|8 #> -5.852 -2.891 Created on 2021-08-17 by the reprex package <https://reprex.tidyverse.org> (v2.0.1) — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <#45>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ABHZZLJBLHUF4OAMC3M7XCDT5HFQ3ANCNFSM5CI5KGPA> . Triage notifications on the go with GitHub Mobile for iOS <https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675> or Android <https://play.google.com/store/apps/details?id=com.github.android&utm_campaign=notification-email> .

[coeusanalytics]

Hi @runehaubo,

Here's my sessionInfo():

> sessionInfo()
R version 4.0.3 (2020-10-10)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 19043)

Matrix products: default

locale:
[1] LC_COLLATE=English_Australia.1252  LC_CTYPE=English_Australia.1252    LC_MONETARY=English_Australia.1252
[4] LC_NUMERIC=C                       LC_TIME=English_Australia.1252    

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] dplyr_1.0.7        ordinal_2019.12-10

loaded via a namespace (and not attached):
 [1] pillar_1.6.2        compiler_4.0.3      captioner_2.2.3     tools_4.0.3         digest_0.6.27       evaluate_0.14      
 [7] lattice_0.20-41     lifecycle_1.0.0     tibble_3.0.4        gtable_0.3.0        ucminf_1.1-4        pkgconfig_2.0.3    
[13] rlang_0.4.10        Matrix_1.2-18       gtsummary_1.4.2     DBI_1.1.0           cli_2.5.0           rstudioapi_0.13    
[19] yaml_2.2.1          xfun_0.24           stringr_1.4.0       knitr_1.33          generics_0.1.0      vctrs_0.3.8        
[25] grid_4.0.3          tidyselect_1.1.0    glue_1.4.2          R6_2.5.0            fansi_0.4.1         survival_3.2-7     
[31] rmarkdown_2.9       tidyr_1.1.2         ggplot2_3.3.2       purrr_0.3.4         magrittr_2.0.1      MASS_7.3-53        
[37] scales_1.1.1        ellipsis_0.3.2      htmltools_0.5.1.1   broom.helpers_1.3.0 splines_4.0.3       assertthat_0.2.1   
[43] gt_0.3.1            colorspace_1.4-1    numDeriv_2016.8-1.1 utf8_1.1.4          stringi_1.6.2       munsell_0.5.0      
[49] crayon_1.3.4

[runehaubo]

Try installing the GitHub version of the package- that should fix your problem. Cheers Rune tir. 17. aug. 2021 kl. 06.13 skrev Hung Vo ***@***.***>:

…

Hi @runehaubo <https://github.com/runehaubo>, Here's my sessionInfo(): > sessionInfo() R version 4.0.3 (2020-10-10) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows 10 x64 (build 19043) Matrix products: default locale: [1] LC_COLLATE=English_Australia.1252 LC_CTYPE=English_Australia.1252 LC_MONETARY=English_Australia.1252 [4] LC_NUMERIC=C LC_TIME=English_Australia.1252 attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] dplyr_1.0.7 ordinal_2019.12-10 loaded via a namespace (and not attached): [1] pillar_1.6.2 compiler_4.0.3 captioner_2.2.3 tools_4.0.3 digest_0.6.27 evaluate_0.14 [7] lattice_0.20-41 lifecycle_1.0.0 tibble_3.0.4 gtable_0.3.0 ucminf_1.1-4 pkgconfig_2.0.3 [13] rlang_0.4.10 Matrix_1.2-18 gtsummary_1.4.2 DBI_1.1.0 cli_2.5.0 rstudioapi_0.13 [19] yaml_2.2.1 xfun_0.24 stringr_1.4.0 knitr_1.33 generics_0.1.0 vctrs_0.3.8 [25] grid_4.0.3 tidyselect_1.1.0 glue_1.4.2 R6_2.5.0 fansi_0.4.1 survival_3.2-7 [31] rmarkdown_2.9 tidyr_1.1.2 ggplot2_3.3.2 purrr_0.3.4 magrittr_2.0.1 MASS_7.3-53 [37] scales_1.1.1 ellipsis_0.3.2 htmltools_0.5.1.1 broom.helpers_1.3.0 splines_4.0.3 assertthat_0.2.1 [43] gt_0.3.1 colorspace_1.4-1 numDeriv_2016.8-1.1 utf8_1.1.4 stringi_1.6.2 munsell_0.5.0 [49] crayon_1.3.4 — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <#45 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ABHZZLJDHSWUJWNO4N56FV3T5HOXTANCNFSM5CI5KGPA> . Triage notifications on the go with GitHub Mobile for iOS <https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675> or Android <https://play.google.com/store/apps/details?id=com.github.android&utm_campaign=notification-email> .

[coeusanalytics]

Looks like it has. Thanks @runehaubo.