Project Status |
simPIC is an R package for simple simulation of single-cell Assay for Transposase Accessible Chromatin sequencing (scATAC-seq) data. simPIC provides a an easy to use interface for:
- estimating simulation parameters
- Objects for storing those parameters
- simulating counts using those parameters
The package can be installed from Bioconductor using the following code
if(!requireNamespace("BiocManager", quietly=TRUE))
install.packages("BiocManager")
BiocManager::install("simPIC")
To get started, check out the vignette for a quick start and detailed look into simPIC. If you prefer, you can also build the vignette yourself by loading simpIC and exploring the available options.
library(simPIC)
browseVignettes("simPIC")