simPIC

Project Status

Overview

simPIC is an R package for simple simulation of single-cell Assay for Transposase Accessible Chromatin sequencing (scATAC-seq) data. simPIC provides a an easy to use interface for:

• estimating simulation parameters
• Objects for storing those parameters
• simulating counts using those parameters

Installation

The package can be installed from Bioconductor using the following code

if(!requireNamespace("BiocManager", quietly=TRUE))
    install.packages("BiocManager")
BiocManager::install("simPIC")

Getting started

To get started, check out the vignette for a quick start and detailed look into simPIC. If you prefer, you can also build the vignette yourself by loading simpIC and exploring the available options.

library(simPIC)
browseVignettes("simPIC")