Expose the ability to encode a Genotoype into a GT field #1648
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droazen
approved these changes
Jan 30, 2023
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| Assert.assertEquals(VCFEncoder.encodeGtField(vc, g1), "0/0"); | ||
| Assert.assertEquals(VCFEncoder.encodeGtField(vc, g2), "1/2"); | ||
| } |
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Can you add a unit test for writeGtField() as well?
* Expose two public methods in VCFEncoder writeGtField and encodeGtField * Supports broadinstitute/gatk#8160 but seems like a useful thing to be able to do in general * minor breaking change in VCFEncoder, made methods formatVCFField and buildAlleleStrings static It is unlikely anyone overrides either of these methods so it should not be a problem.
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It is unlikely anyone overrides either of these methods so it should not be a problem.