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Pan genome for fungal genomes #425
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No. Further info in the FAQ http://sanger-pathogens.github.io/Roary/
…On Thu, 11 Oct 2018, 17:23 bhanusakhamuri, ***@***.***> wrote:
Does roary for fungal genomes that are annotated?
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If roary supported Genbank files it will be trivial to add support, one would just use |
If you want to submit a pull request I would be happy to accept.
…On Sat, 13 Oct 2018, 05:38 Torsten Seemann, ***@***.***> wrote:
If roary supported Genbank files it will be trivial to add support, one
would just use $cds->spliced_seq->translate() to get the proteins.
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@tseemann Did you ever happen to do this? Currently looking for a tool to get fungal pan/core genomes |
This would be quite the useful feature that is not available elsewhere. I looked around and there are not good options to do this with fungal genomes. Same goes for annotations/gene predictions. |
Does roary work for fungal genomes that are annotated?
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