feat: patch patient viral load observation #1507
Workflow file for this run
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| name: Test | |
| on: [push] | |
| env: | |
| DOCKER_BUILDKIT: 1 # Enable Buildkit and let compose use it to speed up image building | |
| COMPOSE_DOCKER_CLI_BUILD: 1 | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| GOOGLE_CLOUD_PROJECT: ${{ secrets.GOOGLE_CLOUD_PROJECT }} | |
| ENVIRONMENT: ${{ secrets.ENVIRONMENT }} | |
| SERVICE_HOST: ${{ secrets.SERVICE_HOST }} | |
| GOOGLE_PROJECT_NUMBER: ${{ secrets.GOOGLE_PROJECT_NUMBER }} | |
| CLOUD_HEALTH_PUBSUB_TOPIC: ${{ secrets.CLOUD_HEALTH_PUBSUB_TOPIC }} | |
| CLOUD_HEALTH_DATASET_ID: ${{ secrets.CLOUD_HEALTH_DATASET_ID }} | |
| OPENCONCEPTLAB_TOKEN: ${{ secrets.OPENCONCEPTLAB_TOKEN }} | |
| OPENCONCEPTLAB_API_URL: ${{ secrets.OPENCONCEPTLAB_API_URL }} | |
| CLOUD_HEALTH_FHIRSTORE_ID: ${{ secrets.CLOUD_HEALTH_FHIRSTORE_ID }} | |
| CLOUD_HEALTH_DATASET_LOCATION: ${{ secrets.CLOUD_HEALTH_DATASET_LOCATION }} | |
| SENTRY_DSN: ${{ secrets.SENTRY_DSN }} | |
| JWT_KEY: ${{ secrets.JWT_KEY }} | |
| SAVANNAH_ADMIN_EMAIL: ${{ secrets.SAVANNAH_ADMIN_EMAIL }} | |
| AUTHSERVER_ENDPOINT: ${{ secrets.AUTHSERVER_ENDPOINT }} | |
| CLIENT_ID: ${{ secrets.CLIENT_ID }} | |
| CLIENT_SECRET: ${{ secrets.CLIENT_SECRET }} | |
| AUTH_USERNAME: ${{ secrets.AUTH_USERNAME }} | |
| AUTH_PASSWORD: ${{ secrets.AUTH_PASSWORD }} | |
| GRANT_TYPE: ${{ secrets.GRANT_TYPE }} | |
| MYCAREHUB_CLIENT_ID: ${{ secrets.MYCAREHUB_CLIENT_ID }} | |
| MYCAREHUB_CLIENT_SECRET: ${{ secrets.MYCAREHUB_CLIENT_SECRET }} | |
| MYCAREHUB_INTROSPECT_URL: ${{ secrets.MYCAREHUB_INTROSPECT_URL }} | |
| CLINICAL_BUCKET_NAME: ${{ secrets.CLINICAL_BUCKET_NAME }} | |
| SENTRY_TRACE_SAMPLE_RATE: ${{ secrets.SENTRY_TRACE_SAMPLE_RATE }} | |
| jobs: | |
| golangci: | |
| strategy: | |
| matrix: | |
| go-version: [1.19.x] | |
| os: [ubuntu-latest] | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/setup-go@v4 | |
| with: | |
| go-version: ${{ matrix.go-version }} | |
| - uses: actions/checkout@v3 | |
| - name: golangci-lint | |
| uses: golangci/golangci-lint-action@v3 | |
| with: | |
| version: latest | |
| lint_and_test: | |
| needs: [golangci] | |
| strategy: | |
| matrix: | |
| go-version: [1.19.x] | |
| os: [ubuntu-latest] | |
| runs-on: ${{ matrix.os }} | |
| timeout-minutes: 80 | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: google-github-actions/setup-gcloud@v0 | |
| with: | |
| project_id: ${{ secrets.GOOGLE_CLOUD_PROJECT }} | |
| service_account_key: ${{ secrets.GOOGLE_APPLICATION_CREDENTIALS }} | |
| export_default_credentials: true | |
| - name: Install Go | |
| uses: actions/setup-go@v4 | |
| with: | |
| go-version: ${{ matrix.go-version }} | |
| - name: Install Go dependencies | |
| run: | | |
| go mod download | |
| go get github.com/axw/gocov/gocov | |
| go get github.com/ory/go-acc | |
| go install github.com/ory/go-acc | |
| go install github.com/axw/gocov/gocov | |
| go get github.com/savannahghi/serverutils@v0.0.7 | |
| - name: Run tests | |
| run: | | |
| go-acc -o coverage.txt --ignore generated,cmd,graph ./... -- -timeout 60m | |
| grep -v "generated.go" coverage.txt | grep -v "_gen.go" | grep -v "_mock.go" | grep -v "*mock.go" | grep -v "mocks.go" | grep -v "*resolver*go" | grep -v "server.go" > coverage.out | |
| go tool cover -html=coverage.out -o coverage.html | |
| gocov convert coverage.out > coverage.json | |
| gocov report coverage.json > coverage_report.txt | |
| tail coverage_report.txt | |
| - name: Install goveralls | |
| env: | |
| GO111MODULE: off | |
| run: go get github.com/mattn/goveralls | |
| - name: Send coverage | |
| env: | |
| COVERALLS_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| run: goveralls -coverprofile=coverage.out -service=github | |
| - name: Quality Gate - Test coverage shall be above threshold | |
| env: | |
| TESTCOVERAGE_THRESHOLD: 80.0 | |
| run: | | |
| bash scripts/coverage.sh |