This GitHub page is a collection of scripts and general code used for the analysis of ViCAR datasets
Make sure that the following dependencies are installed:
• python (>= version 3.4)
• R (>= 3.4.3)
• pairtools (https://github.com/open2c/pairtools)
• samtools (version >= 1.5)
• bedtools (version >= 2.26.0)
• deeptools
• bwa
• tabulate
• matplotlib
• pandas
• numpy
• FitHiChIP is hosted in https://github.com/ay-lab/FitHiChIP