The EEG-BIDS (formerly known as BIDS-MATLAB-tools) repository contains a collection of functions that import and export BIDS-formated experiments. The code is tailored for use as an EEGLAB plugin but may also be used independently of EEGLAB. Conversion of data format from non-supported BIDS binary format requires that EEGLAB be installed (supported formats are EEGLAB .set files, EDF files, BDF files, and Brain Vision Exchange Format files).
Refer to the wiki documentation.
BIDS-MATLAB is a project to import BIDS data. BIDS-MATLAB maps the BIDS directory architectures to MATLAB structures but does not import or convert data like EEG-BIDS. In theory, EEG-BIDS could use BIDS-MATLAB to get the BIDS directory architectures into MATLAB and then convert it to an EEGLAB STUDY. However, in 2021, BIDS-MATLAB could not yet import all the relevant EEG, MEG, and iEEG files.
EEG2BIDS is a Python-based executable that formatted a collection of EDF files in BIDS format. EEG2BIDS requires users to create JSON files for meta-data. It is a tool designed to archive data as part of a lab protocol where JSON files have been prepared in advance and are suited for technicians organizing data. EEG-BIDS export capabilities are more suited for researchers managing their data and are agnostic regarding the original data format.
ezBIDS is a data export tool for MRI and fMRI data. It does not allow to export EEG data to our knowledge.
data2bids.m is a Fieldtrip function to export BIDS data. This includes EEG and maybe fMRI. This function can only be used from the command line.
EEG-BIDS (this program) is the most popular tool to export EEG data using both a graphical interface and/or command line (more than half of the BIDS datasets on OpenNeuro were exported using EEG-BIDS and it has more than 2200 installs in EEGLAB). A compiled stand-alone version will also be released soon.
Accepted EEG input formats are all files that EEGLAB can read.
- EEG export: ✔ (as .set, .edf, .bdf, or .vhmk files)
- iEEG export: ✔ (as .set, .edf or .nwb)
- Eye-tracking export: ✔ (beta)
- HED export: ✔
- BEH export: ✔
- MRI export: ✔ (no conversion)
- fMRI export: ✖
- Motion-cap export: ✖ (upcoming)
- EMG export: ✖ (upcoming)
- MEG export: ✖ (upcoming)
EEG-BIDS allows importing BIDS datasets into EEGLAB. This is the type of information that can be imported.
- EEG import: ✔ (all formats)
- iEEG import: ✔ (all formats)
- MEG import: ✔ (.ds and .fif files supported, more formats upcoming)
- Eye-tracking import: ✖ (upcoming)
- HED import: ✔
- BEH import: ✔
- MRI import: n/a
- fMRI import: n/a
- Motion-cap import: ✔ (beta)
- EMG import: ✖ (upcoming)
Make sure you clone with submodules
git clone --recurse-submodules https://github.com/sccn/EEG-BIDS
Simply place the code in the EEGLAB plugin folder, and EEGLAB will automatically detect it. See documentation at https://github.com/sccn/EEG-BIDS/wiki.
zip -r EEG-BIDS8.0.zip EEG-BIDS/* -x /EEG-BIDS/testing/additionaltests/* /EEG-BIDS/testing/ds004117/* /EEG-BIDS/testing/hbn_eye_tracking_data/* /EEG-BIDS/testing/data/*
v1.0 - initial version
v2.0 - add support for external channel location and fix minor bugs
v3.0 - better export for multiple runs and allowing importing BIDS folder with multiple runs
v3.1 - fix multiple issues at export time, including subject numbering
v3.2 - fix menu conflict in EEGLAB with bids validator; check channel types; add option to choose EEG event field; minor bugs
v3.3 - fix an issue for Windows and work on GUI
v3.4 - fix the issue with saving datasets in memory. Allowing to anonymize participant ID or not. Fixed issue with looking up channel locations.
v3.5 - fix issue with choosing event type in graphic interface; various fixes for GUI edit of BIDS info
v4.0 - fix GUI and many minor export issues
v4.1 - fix the issue with JSON
v5.0 - major fixes to import all OpenNeuro EEG datasets
v5.1 - allow calculating dataset meta-data quality
v5.2 - fix the issue with history
v5.3 - adding the capability to export stimuli
v5.3.1 - update documentation for tInfo.HardwareFilters; fix bug defaults fields not filled for eInfo
v5.4 - fix the issue with reading BIDS information when importing BIDS data to STUDY
v6.0 - new examples and fixes for HED
v6.1 - allow data with no events. Fix HED import/export. Fix history.
v7.0 - split code into different functions. Support for behavioral data. Various bug fixes.
v7.2 - fix the issue with the missing file.
v7.3 - various minor fixes (EEG reference as string; add duration if not present; resave datasets)
v7.4 - fix version issues for HED and BIDS. Export subjects in order. Remove unused columns in participants.tsv file
v7.5 - adding support for coordsystem files, for loading specific runs, support for motion files
v7.6 - adding export to non-EEGLAB formats, refactoring export
v7.7 - fix importing MEG and MEF files. Better handling of runs. Now tracks tool version in BIDS.
v8.0 - renamed files, separate file for task info, adding BIDS statistic output, handling EGI & BVA file better, channel types and units, adding eye-tracking and behavioral support
v9.0 - update json import to conform to BIDS key-level inheritance principle. Support iEEG and MEG export. Support exporting multiple tasks. Fix issues with exporting channel locations.