CGAL explicitly requested and not found or not functional #193
Comments
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Unfortunately, we don't have binaries for Apple silicon yet which means that fastjet has to be compiled by pip locally. |
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The error message is more than 1300 lines. Here it is. Error log: |
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Can you try after installing the following? |
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I had all of them installed already. I still did a |
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Okay. Can you try the following just in case it works better? |
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That also does not help. I get the same error. |
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FWIW I get the same error on my M1 MBP running latest Ventura. There's some messiness with the build environment I can't figure out. I ended up just building in a debian python container and bind-mounting fastjet! |
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It looks like it can't find the brew installed gmp. Perhaps something like the following could help However, we override these in setup.py... |
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@chrispap95 I tried the one with I also edited the lines in I still don't see any changes in the log. |
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I am afraid I can't do much since I don't have a machine with Apple silicon. Can you try the following? Just to see if it can find gmp. cat >> test.c << "EOF"
#include <gmp.h>
int main(){return 0;}
EOF
gcc -o test test.c -lgmpIf the last line fails, then try with gcc -o test test.c -I`brew --prefix gmp`/include -L`brew --prefix gmp`/libIf this fails as well, then I have really no idea how to get this working. |
Yes, the last line failed.
This did not fail. So, maybe we know where the problem is?
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Okay, very interesting. So these flags seem to work but we need to figure out how to pass them to You could try this by changing to the branch |
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Hmm, this does not work. Here are the initial lines of the log I got. log: |
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It seems like this is related. |
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If the rest of the printout looks the same as before, then I have no idea what to try next, and without a machine available to experiment I can't go wild with trials to fix this. The solution that Lindsey provided doesn't look that bad. Maybe try that instead? |
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Thanks a lot @chrispap95 for the help. Do you have a sample |
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You'll have to apt install packages and such to build, you might want to make your own Dockerfile for sanity's sake. Since I was doing a one-off I didn't make one. |
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I recently got access to an Apple silicon (M2) machine that I can use for dev work as well. I haven't done local dev work on an Apple computer for about 12 years at this point (👴) so while I know that At the moment I have a name: fastjet-dev
channels:
- conda-forge
dependencies:
- python=3.11
- autoconf
- automake
- cgal-cpp
- gmp
- libtool
- make
- patch
- pybind11
- swigremoval of the ... and a #!/bin/bash
rm -rf CGAL-5.6*
rm -rf build
cd fastjet-core
git reset --hard fastjet-3.4.2
cd ..
python -m pip install --upgrade --verbose .So far I'm failing extremely early but I'm curious if this is possible at all to do with just conda-forge. |
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Trying to
pip install fastjeton Mac M2, but getting errors like CGAL not found.Steps taken:
brew install cgal. This installs CGAL 5.5.2.pip install --upgrade pip wheelbrew install cgal gmp wget.But so far nothing helped. Any ideas?
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