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[Module] Freesurfer synthregistration #54

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[Module] Freesurfer synthregistration #54

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Commits on Sep 16, 2024

  1. Change org_path

    @anroy1
    anroy1 committed Sep 16, 2024
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  2. initial module commit

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    anroy1 committed Sep 16, 2024
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  3. manage output format for ants and include init transform as output

    @anroy1
    anroy1 committed Sep 16, 2024
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  4. quick fix

    @anroy1
    anroy1 committed Sep 16, 2024
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  5. test fix 1

    @anroy1
    anroy1 committed Sep 16, 2024
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  6. 2nd fix for tests

    @anroy1
    anroy1 committed Sep 16, 2024
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  7. quick fix

    @anroy1
    anroy1 committed Sep 16, 2024
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  8. test naming fix

    @anroy1
    anroy1 committed Sep 16, 2024
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  9. fix scilpy fetcher path

    @anroy1
    anroy1 committed Sep 16, 2024
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  10. fix tests parameters

    @anroy1
    anroy1 committed Sep 16, 2024
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  11. [WIP] modify module and test to manage freesurfer license

    @anroy1
    anroy1 committed Sep 16, 2024
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  12. fix test data, freesurfer license

    @anroy1
    anroy1 committed Sep 16, 2024
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  13. [WIP] improve test

    @anroy1
    anroy1 committed Sep 16, 2024
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  14. Adjust nextflow config and output format

    @anroy1
    anroy1 committed Sep 16, 2024
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  15. Swith transform format to freesurfer standard

    @anroy1
    anroy1 committed Sep 16, 2024
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  16. run prettier

    @anroy1
    anroy1 committed Sep 16, 2024
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  17. Remove license as module do not require it and update parameters with… 

    … newer version
    @anroy1
    anroy1 committed Sep 16, 2024
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  18. Switch transform output to fs .nii.gz format

    @anroy1
    anroy1 committed Sep 16, 2024
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  19. Migrate tests to nf-tests

    @anroy1
    anroy1 committed Sep 16, 2024
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  20. fix nf-tests

    @anroy1
    anroy1 committed Sep 16, 2024
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  21. Remove pytests

    @anroy1
    anroy1 committed Sep 16, 2024
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  22. Run prettier

    @anroy1
    anroy1 committed Sep 16, 2024
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  23. Modify tests config for remote tests

    @anroy1
    anroy1 committed Sep 16, 2024
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  24. Fix test assertion for name only

    @anroy1
    anroy1 committed Sep 16, 2024
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  25. Rerun tests and fix linting

    @anroy1
    anroy1 committed Sep 16, 2024
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  26. adjust process parameters for tests locally

    @anroy1
    anroy1 committed Sep 16, 2024
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  27. [wip] fix alex comments 1/2

    @anroy1
    anroy1 committed Sep 16, 2024
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  28. Add precisions regarding convertion on meta.yml

    @anroy1
    anroy1 committed Sep 16, 2024
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  29. Handling threads in script

    @anroy1
    anroy1 committed Sep 16, 2024
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  30. change container version

    @anroy1
    anroy1 committed Sep 16, 2024
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  31. Use nifti md5sum assertion

    @anroy1
    anroy1 committed Sep 16, 2024
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  32. test with niftiMD5SUM

    @anroy1
    anroy1 committed Sep 16, 2024
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  33. Revert "Change org_path" 

    This reverts commit b188fbc.
    @anroy1
    anroy1 committed Sep 16, 2024
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Commits on Sep 17, 2024

  1. fix test

    @anroy1
    anroy1 committed Sep 17, 2024
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