This plugin provide wrappers around several programs of SPOC.
stable: | devel: | |
You will need to use 3.0 version of Scipion to be able to run these protocols. To install the plugin, you have two options:
- Stable version (not avalaible yet)
scipion installp -p scipion-em-spoc
Developer's version
- download repository
git clone https://github.com/scipion-em/scipion-em-spoc.git
- install
scipion installp -p path_to_scipion-em-spoc --devel
SPOC binaries will be installed automatically with the plugin.
- Default installation path assumed is
software/em/spoc-1.0
, if you want to change it, set SPOC_HOME inscipion.conf
file pointing to the folder where the SPOC is installed.
To check the installation, simply run one of the following Scipion tests:
scipion3 tests spoc.tests.test_protocols_spoc.TestFscFdrControl
A complete list of tests can also be seen by executing scipion test --show --grep spoc
- 1.0
- FSC_FDR Control
- Beckers, M., Jakobi, A. J., Sachse, C. (2019) Thresholding of cryo-EM density maps by false discovery rate control. IUCr Journal 6 (1)