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Fix directory inside of SDSS Montage Chart to use user folder instead of static folder #13

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merged 5 commits into from
Jun 1, 2024
Merged

Fix directory inside of SDSS Montage Chart to use user folder instead of static folder #13

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c656c88
Fix directory to use user folder instead of static folder
KoT17 May 8, 2024
bf2255b
Fix conda import to point to right package location
KoT17 May 9, 2024
39ffaef
Update conda command to pip and point to correct workdir
KoT17 May 21, 2024
09375c1
Add note for SciServer users to know to run notebook inside of owned …
KoT17 May 21, 2024
8e4ef0d
Change directory to Temporary folder and remove TODO
KoT17 Jun 1, 2024
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19 changes: 14 additions & 5 deletions Astronomy/sdss_mosaics/SDSS_today.ipynb
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Original file line number Diff line number Diff line change
Expand Up @@ -17,7 +17,9 @@
"\n",
"## Setup\n",
"\n",
"The Montage Python package is a mixture of pure Python and Python binary extension code. It can be downloaded using <tt style=\"color: #c00000;\">pip install MontagePy</tt>. This notebook also assumes that Astropy and Astroquery have been installed.\n"
"The Montage Python package is a mixture of pure Python and Python binary extension code. It can be downloaded using <tt style=\"color: #c00000;\">pip install MontagePy</tt>. This notebook also assumes that Astropy and Astroquery have been installed.\n",
"\n",
"If the <tt style=\"color: #c00000;\">pip install</tt> don't resolve, please note that this notebook needs to be run inside of your `/Storage/` folder. \n"
]
},
{
Expand Down Expand Up @@ -57,7 +59,8 @@
}
],
"source": [
"!conda install astroquery"
"%pip install astroquery\n",
"%pip install MontagePy"
]
},
{
Expand All @@ -84,6 +87,9 @@
"import warnings\n",
"import sdss_archive\n",
"import datetime\n",
"import SciServer\n",
"\n",
"from SciServer import Authentication\n",
"\n",
"from astropy.io import ascii\n",
"\n",
Expand All @@ -105,7 +111,9 @@
"band = \"g\"\n",
"workdir = \"M51g\"\n",
"\n",
"workdir = \"/home/idies/workspace/Temporary/raddick/montage_temp/\" + workdir + '/'"
"# Use user storage\n",
"myUserName = Authentication.getKeystoneUserWithToken(Authentication.getToken()).userName\n",
"workdir = \"/home/idies/workspace/Temporary/\" + myUserName + \"/scratch/montage_temp/\" + workdir + \"/\""
]
},
{
Expand Down Expand Up @@ -145,8 +153,9 @@
"print(\"Work directory: \" + workdir, flush=True)\n",
"\n",
"try:\n",
" os.makedirs(workdir) \n",
"except:\n",
" os.makedirs(workdir, exist_ok=True) \n",
"except OSError as e :\n",
" print(\"Failed to created folder at \" + workdir)\n",
" pass\n",
" \n",
"os.chdir(workdir)\n",
Expand Down