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Additional function parameters / changed functionality / changed defaults?
New analysis tool: A simple analysis tool you have been using and are missing in sc.tools?
New plotting function: A kind of plot you would like to seein sc.pl?
External tools: Do you know an existing package that should go into sc.external.*?
Other?
Hi! It would be great if Scanpy could create sublevels of annotation like the the attached figure 3D of the seurat v4 paper. This would make legends clearer in cases where you have different subtypes of T cells for example.
For instance the color argument could take as an input a dictionary with the label categories.
The text was updated successfully, but these errors were encountered:
Is that something that can be created directly from Seurat?
I think making those consistently look good may be beyond my ability, so I think we'd benefit from an example to work from here. I also suspect the plot here was manually put together.
sc.tools
?sc.pl
?sc.external.*
?Hi! It would be great if Scanpy could create sublevels of annotation like the the attached figure 3D of the seurat v4 paper. This would make legends clearer in cases where you have different subtypes of T cells for example.
For instance the
color
argument could take as an input a dictionary with the label categories.The text was updated successfully, but these errors were encountered: