Update the vignette

[emanuelavilla]

Hello!

I am using your scANVI tool but I have to report that the vignette is old. For example, there is the command

scvi$data$setup_anndata(adata_both, labels_key="celltype", batch_key="batch")

However, it worked with scvi-tool v=0.8. With version 0.15, the command is

scvi$model$SCVI$setup_anndata(adata_both, labels_key="celltype", batch_key="batch")

I think that it would be important to maintain the vignette update because many people, including people approaching the bioinformatic, have access.

Thanks!

Emanuela

[adamgayoso]

Thanks for the issue. Which tutorial are you viewing?

[emanuelavilla]

Sorry! I was sure I had reported the name of the vignette!
It is the "ATAC-seq analysis in R" (https://docs.scvi-tools.org/en/0.15.1/tutorials/notebooks/peakvi_in_R.html).

[adamgayoso]

Ah I see we can fix this.

[adamgayoso]

@martinkim0 this can be fixed by just editing the file itself without running anything