sash

scwatts/sash is the UMCCR post-processing WGS workflow.

Requirements

nextflow run scwatts/sash \
    -profile docker \
    --input samplesheet.csv \
    --ref_data_path reference_data/ \
    --outdir output/

Name		Name	Last commit message	Last commit date
Latest commit History 117 Commits
.devcontainer		.devcontainer
assets		assets
conf		conf
docs		docs
lib		lib
modules		modules
subworkflows/local		subworkflows/local
workflows		workflows
.bumpversion.cfg		.bumpversion.cfg
.editorconfig		.editorconfig
.gitattributes		.gitattributes
.gitignore		.gitignore
.gitpod.yml		.gitpod.yml
.nf-core.yml		.nf-core.yml
.pre-commit-config.yaml		.pre-commit-config.yaml
.prettierignore		.prettierignore
.prettierrc.yml		.prettierrc.yml
CHANGELOG.md		CHANGELOG.md
CITATIONS.md		CITATIONS.md
LICENSE		LICENSE
README.md		README.md
main.nf		main.nf
modules.json		modules.json
nextflow.config		nextflow.config
nextflow_schema.json		nextflow_schema.json
pipeline_template.yml		pipeline_template.yml
pyproject.toml		pyproject.toml
tower.yml		tower.yml