vignette: number of platforms for the GSE781 dataset

[dalloliogm]

In the vignette, in the section Converting a GSE to an expressionset, you mention that all the GSM arrays are from the GPL5 platform. However if I run the code on my computer, I get a list of GPL96 and GPL97 arrays:

> gse <- getGEO(filename=system.file("extdata/GSE781_family.soft.gz",package="GEOquery"))
> gsmplatforms <- lapply(GSMList(gse),function(x) {Meta(x)$platform})
> gsmplatforms
$GSM11805
[1] "GPL96"

$GSM11810
[1] "GPL97"

$GSM11814
[1] "GPL96"

This is also evident in the bioconductor page of GEOquery: http://www.bioconductor.org/packages/release/bioc/vignettes/GEOquery/inst/doc/GEOquery.html#converting-gse-to-an-expressionset

Maybe this file has been changed since the last documentation update?

[seandavi]

Nice catch, @dalloliogm. Thanks. Should be fixed.

[dalloliogm]

Thanks for fixing it! It is also good to have an example of the Filter function.

[seandavi]

Yes, Filter is not used often enough (by me).

On Tue, Apr 21, 2015 at 10:28 AM, dalloliogm notifications@github.com
wrote:

Thanks for fixing it! It is also good to have an example of the Filter
function.

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