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1. PrivSTRAT PrivSTRAT Public

   Python 2 2

2. ivPerturbSeq ivPerturbSeq Public

   Code for in vivo Perturb-seq

   R 3

3. BulkIsoform BulkIsoform Public

   Upstream pipeline for bulk RNASeq preprocessing and R package for downstream analysis

   R

4. CellLevel_QC CellLevel_QC Public

   A simple java based command to extract QC information (%intronic, %antisense, etc) from a CellRanger bam file.

   Java 7

5. ASE_pipeline ASE_pipeline Public

   Our basic allele specific analysis pipeline for single nuclei data, based on nextflow

   Java 1

6. scAlleleExpression scAlleleExpression Public

   An R package for SNP level allelic expression analysis of single cell or nuclei data.

   R 1