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@seiboldlab

Seibold Lab

Identifying genetic determinants and biomarkers of complex lung diseases

Popular repositories Loading

  1. SingleCell_IL13 SingleCell_IL13 Public

    Code for the paper, "Single cell and population transcriptomics reveal pan-epithelial remodeling in type 2-high asthma"

    R 3 1

  2. SingleCell_smoking SingleCell_smoking Public

    Code used for the paper: "Dissecting the cellular specificity of smoking effects and reconstructing lineages in the human airway epithelium"

    R 2 3

  3. ACE2_TMPRSS2_Airway ACE2_TMPRSS2_Airway Public

    Code repository for the manuscript entitled "Type 2 and interferon inflammation strongly regulate SARS-CoV-2 related gene expression in the airway epithelium"

    R 1

  4. virprof virprof Public

    Pipeline for recovering and quantifying non-host genomes from RNA-seq

    Python 1

  5. AirPol2020 AirPol2020 Public

    Code repository for the manuscript entitled "Genome-wide analysis reveals mucociliary remodeling of the airway epithelium induced by urban PM2.5" submitted to AJRCMB

    R

  6. Nasal_TWAS Nasal_TWAS Public

    Shell

Repositories

Showing 7 of 7 repositories
  • virprof Public

    Pipeline for recovering and quantifying non-host genomes from RNA-seq

    seiboldlab/virprof’s past year of commit activity
    Python 1 0 15 0 Updated Aug 14, 2024
  • ITLN1_paper Public

    This repository contains code for generating figures in the Nature Communications paper, "A common polymorphism in the Intelectin-1 gene influences mucus plugging in severe asthma"

    seiboldlab/ITLN1_paper’s past year of commit activity
    R 0 0 0 0 Updated Apr 4, 2024
  • Nasal_TWAS Public
    seiboldlab/Nasal_TWAS’s past year of commit activity
    Shell 0 0 0 0 Updated Jan 25, 2022
  • SingleCell_IL13 Public

    Code for the paper, "Single cell and population transcriptomics reveal pan-epithelial remodeling in type 2-high asthma"

    seiboldlab/SingleCell_IL13’s past year of commit activity
    R 3 1 0 1 Updated Nov 1, 2021
  • ACE2_TMPRSS2_Airway Public

    Code repository for the manuscript entitled "Type 2 and interferon inflammation strongly regulate SARS-CoV-2 related gene expression in the airway epithelium"

    seiboldlab/ACE2_TMPRSS2_Airway’s past year of commit activity
    R 1 0 0 0 Updated Aug 13, 2020
  • AirPol2020 Public

    Code repository for the manuscript entitled "Genome-wide analysis reveals mucociliary remodeling of the airway epithelium induced by urban PM2.5" submitted to AJRCMB

    seiboldlab/AirPol2020’s past year of commit activity
    R 0 0 0 0 Updated Feb 5, 2020
  • SingleCell_smoking Public

    Code used for the paper: "Dissecting the cellular specificity of smoking effects and reconstructing lineages in the human airway epithelium"

    seiboldlab/SingleCell_smoking’s past year of commit activity
    R 2 3 0 0 Updated Dec 9, 2019

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