Cannot find a python module named "libnauty_graph"

[ghost]

Hi, thanks for your sharing for python implementation of PATCHY-SAN method! I just have a question about it, you have used a python module named "libnauty_graph", but I can find it anywhere. I cannot install it by "pip install ..." or "brew install ..." or download it on website, and I cannot find it in your git either. So could you please tell me how can I get "libnauty_graph"? Thanks for your kindness!

[seiya-kumada]

Thank you for your interest. As described in 'procedures.txt', you have to make libnauty_graph.so. $> git clone https://github.com/seiya-kumada/patchy-san.git $> cd patchy-san/nauty_sample $> mkdir lib $> mkdir -p obj/nauty_class/nauty_class $> make For more details, see 'procedures.txt' in the directory 'patchy-san.' Regards, S.Kumada 2018年7月31日(火) 15:03 qiumengting <notifications@github.com>:

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Hi, thanks for your sharing for python implementation of PATCHY-SAN method! I just have a question about it, you have used a python module named "libnauty_graph", but I can find it anywhere. I cannot install it by "pip install ..." or "brew install ..." or download it on website, and I cannot find it in your git either. So could you please tell me how can I get "libnauty_graph"? Thanks for your kindness! — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#1>, or mute the thread <https://github.com/notifications/unsubscribe-auth/ATV_Z1zUlrBb-ZKZxoI8TKGfvmqSgRbhks5uL_M6gaJpZM4VnpcW> .

[ghost]

Thanks for your replying. But I have encountered a problem when I run the last step "make" in the terminal, and the error is shown in the followings.

g++-4.9 -fPIC -I/usr/local/include -I/usr/local/nauty26r7/include -I./nauty_class/nauty_class -I/usr/include/python2.7 -DNDEBUG -DBOOST_PYTHON=1 -O3 -Wall -std=c++14 -Wno-unused-local-typedefs -o obj/./nauty_class/nauty_class/NautyGraph.o -c nauty_class/nauty_class/NautyGraph.cpp
make: g++-4.9: No such file or directory
make: *** [obj/./nauty_class/nauty_class/NautyGraph.o] Error 1

I have no idea what can be done to solve this problem. and also I cannot find "procedures.txt" in the directory "patchy-san".

Thanks for your kind help!

[shaofengzeng]

I also meet this problem. Hope for your solution
and another problem is "fatal error: nauty.h: No such file or directory"

[shaofengzeng]

This project should be run on ubuntu os (like ubuntu 16.04).
And you need to pay attention to three things.

1. setup graph_tool(https://graph-tool.skewed.de/). if you using anaconda, try the following command:
   conda install -c ostrokach-forge -c pkgw-forge -c conda-forge graph-tool
2. setup nauty26r7. This can be download from https://github.com/sebasguts/NautyTracesInterface.
   What we need is only the files of directory "nauty26r7" . Then modify the file "makefile" as follows:
   CC=gcc -shared -fPIC
   save it, and open a terminal change to the directory of nauty26r7, followed with the following
   command:
   make
   After the compilation, make two directory in anuty26r7---"include", "lib". Copy all the file *.h to the
   directory "include", the copy all the compiled files， *.o *.a or any other executable files to the
   directory "lib". finally move the directory nauty26r7 to the director /usr/local/.
   Finally, add the libs to the searching directory just as follows:
   cd /etc/ld.so.conf.d/
   sudo gedit nauty26r7.conf
   write the path /usr/local/nauty26r7/lib into file nauty26r7.conf and save it. After that, using the
   command:
   sudo ldconfig
   to update the cache.
3. setup cpplinq. download file from https://github.com/mrange/cpplinq
   and cd to the directory of Test, followed with the command:
   sh compile_with_g++.sh
   after the compilation, copy the files cpplinq.g++ and cpplinq.hpp(/cpplinq-master/CppLinq/) to
   directory /patchy-san-master/nauty_sample/nauty_class/_nauty_class/

[seiya-kumada]

Sorry!
I forgot to commit 'procedures.txt' that I wrote when I implemented the code.
I committed it.
Thanks for your interests.
Regards,
S. Kumada