New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

species annotation part 2 #76

Closed

3 tasks done

h-2 opened this issue Nov 21, 2016 · 0 comments

Assignees

Labels

feature (planned)

Milestone

Member

h-2 commented Nov 21, 2016 •

edited

Loading

add refseq regex to accession detection
- https://www.ncbi.nlm.nih.gov/books/NBK21091/table/ch18.T.refseq_accession_numbers_and_mole/?report=objectonly
- http://bioportal.bioontology.org/ontologies/EDAM/?p=classes&conceptid=http%3A%2F%2Fedamontology.org%2Fdata_2385
- (NC|AC|NG|NT|NW|NZ|NM|NR|XM|XR|NP|AP|XP|YP|ZP)_[0-9]+
uniparc accession extraction
add support for .dat mapping files from uniprot in addition to .accession2taxid from NCBI

The text was updated successfully, but these errors were encountered:

h-2 added the feature (planned) label

h-2 added this to the 1.9.3 milestone

h-2 self-assigned this

h-2 closed this as completed

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment