[FIX] mason_variator: Fix StructuralVariantRecord::endPosition() for deletions. #184
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| name: macOS | |
| on: | |
| push: | |
| branches: | |
| - 'main' | |
| pull_request: | |
| workflow_dispatch: | |
| concurrency: | |
| group: macos-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: ${{ github.event_name != 'push' }} | |
| env: | |
| TZ: Europe/Berlin | |
| defaults: | |
| run: | |
| shell: bash -Eexuo pipefail {0} | |
| jobs: | |
| build: | |
| name: ${{ matrix.name }} | |
| runs-on: macos-12 | |
| timeout-minutes: 180 | |
| if: github.repository_owner == 'seqan' || github.event_name == 'workflow_dispatch' | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - name: "clang17" | |
| compiler: "clang-17" | |
| build_type: Release | |
| cxx_flags: "-std=c++23" | |
| - name: "clang16" | |
| compiler: "clang-16" | |
| build_type: Release | |
| cxx_flags: "-std=c++20" | |
| - name: "clang15" | |
| compiler: "clang-15" | |
| build_type: Release | |
| cxx_flags: "-std=c++20" | |
| - name: "gcc13" | |
| compiler: "gcc-13" | |
| build_type: Release | |
| cxx_flags: "-std=c++23" | |
| - name: "gcc12" | |
| compiler: "gcc-12" | |
| build_type: Release | |
| cxx_flags: "-std=c++20" | |
| - name: "gcc11" | |
| compiler: "gcc-11" | |
| build_type: Release | |
| cxx_flags: "-std=c++20" | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 1 | |
| - name: Setup toolchain | |
| uses: seqan/actions/setup-toolchain@main | |
| with: | |
| compiler: ${{ matrix.compiler }} | |
| ccache_size: 125M | |
| - name: Install dependencies | |
| run: install boost | |
| - name: Install CMake | |
| uses: seqan/actions/setup-cmake@main | |
| with: | |
| cmake: 3.12.4 | |
| - name: Setup Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.x | |
| - name: Install Python dependencies | |
| run: | | |
| pip install setuptools wheel | |
| pip install -r manual/requirements.txt | |
| - name: Configure tests | |
| run: | | |
| mkdir build | |
| cd build | |
| cmake .. -DCMAKE_BUILD_TYPE=${{ matrix.build_type }} \ | |
| -DCMAKE_CXX_FLAGS="${{ matrix.cxx_flags }} -Wextra -Wall -pedantic -Werror" \ | |
| -DSEQAN_DISABLE_VERSION_CHECK=ON \ | |
| -DSEQAN_GH_ACTIONS_BUILD:BOOL=ON \ | |
| -DPython3_ROOT_DIR=${pythonLocation} \ | |
| -DPython3_EXECUTABLE=${pythonLocation}/bin/python3 \ | |
| -DCMAKE_C_COMPILER_LAUNCHER=ccache \ | |
| -DCMAKE_CXX_COMPILER_LAUNCHER=ccache | |
| - name: Build tests | |
| run: | | |
| ccache -z | |
| cd build | |
| make -k -j3 | |
| ccache -sv | |
| - name: Run tests | |
| continue-on-error: true | |
| id: test | |
| run: | | |
| cd build | |
| ctest . -j3 --output-on-failure --timeout 240 | |
| - name: Rerun failed tests | |
| if: steps.test.outcome == 'failure' | |
| run: | | |
| cd build | |
| ctest . -j3 --output-on-failure --timeout 240 --rerun-failed |