[FIX] mason_variator: Fix StructuralVariantRecord::endPosition() for deletions. #277
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| name: Windows | |
| on: | |
| push: | |
| branches: | |
| - 'main' | |
| pull_request: | |
| workflow_dispatch: | |
| concurrency: | |
| group: windows-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: ${{ github.event_name != 'push' }} | |
| env: | |
| TZ: Europe/Berlin | |
| jobs: | |
| build: | |
| name: ${{ matrix.name }} | |
| runs-on: windows-2022 | |
| timeout-minutes: 180 | |
| if: github.repository_owner == 'seqan' || github.event_name == 'workflow_dispatch' | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - name: "Visual Studio 17 2022" | |
| vsversion : 2022 | |
| build_type: Release | |
| cxx_flags: "/std:c++latest" | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 1 | |
| - name: Setup MSVC | |
| uses: ilammy/msvc-dev-cmd@v1 | |
| with: | |
| vsversion: ${{ matrix.vsversion }} | |
| - name: Setup Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.x | |
| - name: Install Python dependencies | |
| run: | | |
| pip install setuptools wheel | |
| pip install -r manual/requirements.txt | |
| - name: Setup conda | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| activate-environment: "" | |
| auto-activate-base: true | |
| auto-update-conda: false | |
| - name: Install conda dependencies | |
| run: | | |
| conda install -c conda-forge boost-cpp bzip2 libxml2 zlib | |
| $CONDA_BASE = conda info --base | |
| "$CONDA_BASE\Library\include" | Out-File -FilePath $env:GITHUB_PATH -Append | |
| "$CONDA_BASE\Library\lib" | Out-File -FilePath $env:GITHUB_PATH -Append | |
| - name: Configure tests | |
| run: | | |
| New-Item -Name "build" -ItemType "directory" -Force | |
| cd build | |
| cmake .. -G "${{ matrix.name }}" ` | |
| -DCMAKE_BUILD_TYPE=${{ matrix.build_type }} ` | |
| -DCMAKE_CXX_FLAGS="${{ matrix.cxx_flags }} /EHsc /W2 /wd4244 /wd4146" ` | |
| -DSEQAN_DISABLE_VERSION_CHECK=ON ` | |
| -DSEQAN_GH_ACTIONS_BUILD:BOOL=ON ` | |
| -DPython3_ROOT_DIR=$env:pythonLocation ` | |
| -DPython3_EXECUTABLE=$env:pythonLocation/bin/python3 | |
| - name: Build tests | |
| run: | | |
| cd build | |
| cmake --build . --config "${{ matrix.build_type }}" --parallel 2 -- /p:ContinueOnError=ErrorAndContinue | |
| - name: Run tests | |
| continue-on-error: true | |
| id: test | |
| run: | | |
| cd build | |
| ctest . -j2 -C "${{ matrix.build_type }}" --output-on-failure --timeout 240 -E "app_test_yara" | |
| - name: Rerun failed tests | |
| if: steps.test.outcome == 'failure' | |
| run: | | |
| cd build | |
| ctest . -j2 -C "${{ matrix.build_type }}" --output-on-failure --timeout 240 --rerun-failed |